Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi19g1150 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1151 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1152 . . . . Adu07g02156 . Aed1g0370 . Aev10g1140 . Ahy18g1759 . Aip08g01970 . . . Amo18g2229 . Apr2g0578 . Arst7g02739 . . . . . Bva09g01059 Bva07g01488 Car01g01850 . Cca10g01312 . . . Dod10g0760 . . . . . Gma08g01598 Gma15g02415 . . Gso8g1437 Gso8g1437 . . . Lal1g1564 Lal2g0666 Lal20g0437 . . . . . . . . . . Lasa1g04686 . . . . . . . . . Lja3g3903 . Mal4g1833 . . . . . . . Mtr2g2338 . . . Phco10g00555 . . . . Psa1g0055 Pste3g01958 . . . . . . . Pvu5g0570 . . . . . Spst5g01636 . Ssu8g1381 . . . Tpr7g3410 . . . Tsu02g03978 . . . . . . . . . . . Vra5g2361 .
Vvi19g1153 . . . . . . . . . . . Ahy13g1874 . Aip03g02075 . . . Amo13g2362 . . . . . . . . Bva09g01060 Bva09g01060 . . . . . . . . . . . . . . . . . . . . . . Lal2g0667 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto7g0049 . . . . . . . . . . . . . . . . . .
Vvi19g1154 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1155 . . . . . . Aed1g0368 . Aev10g1137 . Ahy18g1760 . Aip08g01973 . . . Amo18g2232 . Apr2g0580 . . . . . . . Bva09g01061 Bva07g01487 Car01g01847 . Cca10g01314 . . . Dod10g0756 . . . . . Gma08g01595 Gma15g02417 . . Gso8g1434 Gso8g1434 . . . . . Lal20g0439 . . . . . . . . . . . . . . . . . . . . Lja3g3907 . Mal4g1844 . . . . . . . Mtr2g2330 . . . . . . . . Psa1g0057 . . . . . . . . . . . . . . . . Ssu8g1384 . . Sto7g0048 Tpr7g3230 . . . Tsu02g03967 . . . . . . . . . . . Vra5g2359 .
Vvi19g1156 . . . . Adu07g02151 . Aed1g0365 . Aev10g1135 . Ahy18g1763 . Aip08g01976 . Alju02g0957 . . . Apr2g0582 . Arst7g02729 . . . Bisa12g0344 . . Bva07g01486 Car01g01845 . Cca10g01316 . Dere08g0194 . Dod10g0755 . Enph3g0812 . Glsi14g0805 . Gma08g01593 . . . Gso8g1432 . . . . . . Lal20g0442 . . . . . . . . . . . . Lele09g0511 Lele10g0476 Lele11g0517 Lele12g0803 . . . . Lja3g3908 . Mal4g1846 . Mepo6g02743 . Mesa5g01856 . Mibi01g0848 . Mtr2g2328 . . . Phco10g00560 . Prci7g1577 . . Psa1g0060 Pste3g01948 . . Pte15g01580 . . Pumo4g03008 . Pvu5g0574 . Rops7g01635 . Seca4g06602 . Spst5g01614 . Ssu8g1386 . . Sto7g0044 Tpr7g3228 . . . Tsu02g03965 . Vian11g01508 . Vifa1g08637 . . . Viun1g00914 . . . Vra5g2357 .
Vvi19g1157 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1158 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1159 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Tpr Tpr7g3410 Chr7 42329080 42333712 +
Vvi Vvi19g1150 Chr19 18679154 18679264 -
Vvi Vvi19g1151 Chr19 18689698 18703227 -
Vvi Vvi19g1152 Chr19 18708857 18709848 +
Adu Adu07g02156 Chr07 71230779 71233293 -
Aed Aed1g0370 Chr1 5448836 5450965 -
Aev Aev10g1140 Chr10 15152112 15153958 -
Ahy Ahy18g1759 Chr18 58197923 58200229 +
Aip Aip08g01970 Chr08 56651552 56653935 +
Amo Amo18g2229 Chr18 68961375 68963854 +
Apr Apr2g0578 Chr2 6829059 6831280 +
Arst Arst7g02739 Chr7 70082946 70085217 -
Bva Bva09g01059 Chr09 5422575 5424428 +
Bva Bva07g01488 Chr07 14792285 14793659 -
Car Car01g01850 Chr01 42557887 42560250 -
Cca Cca10g01312 Chr10 17990401 17992341 +
Dod Dod10g0760 Chr10 22730634 22732299 -
Gma Gma08g01598 Chr08 14128724 14131828 +
Gma Gma15g02415 Chr15 51252938 51255940 +
Gso Gso8g1437 Chr8 13938427 13941073 +
Gso Gso8g1437 Chr8 13938427 13941073 +
Lal Lal1g1564 Chr1 18001042 18004007 -
Lal Lal2g0666 Chr2 4004975 4006440 +
Lal Lal20g0437 Chr20 3538782 3548926 +
Lasa Lasa1g04686 Chr1 769049134 769050305 -
Lja Lja3g3903 Chr3 76828473 76831501 +
Mal Mal4g1833 Chr4 34634641 34637065 +
Mtr Mtr2g2338 Chr2 35370445 35372733 -
Phco Phco10g00555 Chr10 6091477 6093956 +
Psa Psa1g0055 Chr1 3357843 3359659 +
Pste Pste3g01958 Chr3 13329329 13332778 -
Pvu Pvu5g0570 Chr5 7207937 7209787 +
Spst Spst5g01636 Chr5 51187999 51189429 -
Ssu Ssu8g1381 Chr8 26451935 26454231 +
Tpr Tpr7g3410 Chr7 42329080 42333712 +
Tsu Tsu02g03978 Chr02 46223734 46226069 -
Vra Vra5g2361 Chr5 30578680 30580333 -
Vvi Vvi19g1153 Chr19 18712666 18722749 -
Ahy Ahy13g1874 Chr13 31428918 31442150 +
Aip Aip03g02075 Chr03 30236437 30249534 +
Amo Amo13g2362 Chr13 40790003 40803433 +
Bva Bva09g01060 Chr09 5422575 5427923 -
Bva Bva09g01060 Chr09 5422575 5427923 -
Lal Lal2g0667 Chr2 4006949 4013504 -
Sto Sto7g0049 Chr7 448464 453450 +
Vvi Vvi19g1154 Chr19 18754101 18762043 +
Vvi Vvi19g1155 Chr19 18785509 18790092 -
Aed Aed1g0368 Chr1 5423920 5428611 +
Aev Aev10g1137 Chr10 15120645 15127422 +
Ahy Ahy18g1760 Chr18 58337757 58344167 -
Aip Aip08g01973 Chr08 56763038 56777322 -
Amo Amo18g2232 Chr18 69026852 69033091 -
Apr Apr2g0580 Chr2 6848347 6853014 -
Bva Bva09g01061 Chr09 5430583 5433362 -
Bva Bva07g01487 Chr07 14785327 14789586 +
Car Car01g01847 Chr01 42502314 42507424 +
Cca Cca10g01314 Chr10 18035108 18040364 -
Dod Dod10g0756 Chr10 22659243 22664409 +
Gma Gma08g01595 Chr08 14093118 14097490 +
Gma Gma15g02417 Chr15 51302546 51307312 -
Gso Gso8g1434 Chr8 13902996 13907856 +
Gso Gso8g1434 Chr8 13902996 13907856 +
Lal Lal20g0439 Chr20 3563168 3569205 -
Lja Lja3g3907 Chr3 76913936 76919962 -
Mal Mal4g1844 Chr4 34934724 34940250 -
Mtr Mtr2g2330 Chr2 35224346 35229822 +
Psa Psa1g0057 Chr1 3375349 3379902 -
Ssu Ssu8g1384 Chr8 26531549 26535994 -
Sto Sto7g0048 Chr7 437995 441664 +
Tpr Tpr7g3230 Chr7 40069209 40076923 +
Tsu Tsu02g03967 Chr02 46077097 46084104 +
Vra Vra5g2359 Chr5 30542659 30547475 +
Vvi Vvi19g1156 Chr19 18804866 18812935 -
Adu Adu07g02151 Chr07 71130534 71139743 +
Aed Aed1g0365 Chr1 5399271 5406801 +
Aev Aev10g1135 Chr10 15091424 15098210 +
Ahy Ahy18g1763 Chr18 58470120 58479469 -
Aip Aip08g01976 Chr08 56893198 56902395 -
Alju Alju02g0957 Chr02 7224991 7232562 -
Apr Apr2g0582 Chr2 6864924 6875154 -
Arst Arst7g02729 Chr7 69982564 69991844 +
Bisa Bisa12g0344 Chr12 4639221 4653508 +
Bva Bva07g01486 Chr07 14772545 14779681 +
Car Car01g01845 Chr01 42467402 42483564 +
Cca Cca10g01316 Chr10 18055697 18073686 -
Dere Dere08g0194 Chr08 3444173 3455553 +
Dod Dod10g0755 Chr10 22628984 22640274 +
Enph Enph3g0812 Chr3 29417992 29429036 +
Glsi Glsi14g0805 Chr14 9292410 9309315 +
Gma Gma08g01593 Chr08 14068855 14078530 +
Gso Gso8g1432 Chr8 13879122 13889157 +
Lal Lal20g0442 Chr20 3583690 3594634 -
Lele Lele09g0511 Chr09 3792749 3799763 +
Lele Lele10g0476 Chr10 3359830 3369053 +
Lele Lele11g0517 Chr11 5134926 5145201 +
Lele Lele12g0803 Chr12 16095576 16102309 -
Lja Lja3g3908 Chr3 76949469 76957638 -
Mal Mal4g1846 Chr4 34982256 34991053 -
Mepo Mepo6g02743 Chr6 37733552 37746594 +
Mesa Mesa5g01856 Chr5 28804025 28815191 -
Mibi Mibi01g0848 Chr01 8419459 8429017 -
Mtr Mtr2g2328 Chr2 35195065 35207031 +
Phco Phco10g00560 Chr10 6146471 6167364 -
Prci Prci7g1577 Chr7 31617756 31628081 +
Psa Psa1g0060 Chr1 3539878 3564101 -
Pste Pste3g01948 Chr3 13266450 13276411 +
Pte Pte15g01580 Chr15 13393098 13400538 +
Pumo Pumo4g03008 Chr4 58362891 58370643 +
Pvu Pvu5g0574 Chr5 7279011 7296375 -
Rops Rops7g01635 Chr7 24938019 24949955 -
Seca Seca4g06602 Chr4 134607230 134622524 -
Spst Spst5g01614 Chr5 50716036 50728858 -
Ssu Ssu8g1386 Chr8 26554362 26569607 -
Sto Sto7g0044 Chr7 418542 428112 +
Tpr Tpr7g3228 Chr7 40036102 40047429 +
Tsu Tsu02g03965 Chr02 46048326 46057422 +
Vian Vian11g01508 Chr11 25155257 25169880 +
Vifa Vifa1g08637 Chr1 1362986360 1363013627 +
Viun Viun1g00914 Chr1 12610312 12641887 +
Vra Vra5g2357 Chr5 30490249 30513535 +
Vvi Vvi19g1157 Chr19 18873805 18880961 -
Vvi Vvi19g1158 Chr19 18966010 18966189 -
Vvi Vvi19g1159 Chr19 18966671 18967420 -