Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi19g1140 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1141 . . . . . . Aed1g0377 . Aev10g1148 . Ahy18g1747 . Aip08g01956 . . . Amo18g2207 . Apr2g0571 . . . . . . . Bva09g01050 Bva07g01496 Car01g01856 . Cca10g01302 . . . Dod10g0769 . . . . . Gma08g01603 Gma15g02405 . . Gso8g1443 Gso8g1443 . . . . . Lal20g0431 . . . . . . . . . . . . . . . . . . . . Lja3g3886 . Mal4g1820 . . . . . . . Mtr2g2346 . . . . . . . . . . . . . . . . . . . . . . . . . Ssu8g1374 . . . Tpr7g3250 . . . Tsu02g03988 . . . . . . . . . . . . .
Vvi19g1142 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lal9g0578 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1143 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1144 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1145 Acco01g3091 . Accr1g02757 . Adu07g02163 . . . Aev10g1146 . Ahy18g1748 . Aip08g01957 . Alju02g0944 . Amo18g2211 . Apr2g0572 . Arst7g02753 . . . Bisa12g0355 . Bva09g01053 Bva07g01495 Car01g01855 . Cca10g01303 . Dere08g0210 . Dod10g0768 . Enph3g0820 . Glsi14g0830 . Gma08g01602 Gma15g02407 . . Gso8g1442 Gso8g1442 . . . Lal1g1565 . Lal20g0432 . . . . . . . . . . Lasa1g04696 . Lele09g0522 Lele10g0486 Lele11g0527 Lele12g0794 . . . . Lja3g3889 . Mal4g1821 . . . . . Mibi01g0836 . Mtr2g2345 . . . Phco10g00547 . Prci7g1597 . . . Pste3g01974 . . . . . . . Pvu5g0564 . . . . . Spst5g01627 . Ssu8g1375 . . Sto7g0058 Tpr7g3249 . . . Tsu02g03987 . . . . . Vimu4g01692 . . . . . . .
Vvi19g1146 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1147 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1148 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1149 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi19g1140 Chr19 18256671 18256904 +
Vvi Vvi19g1141 Chr19 18293840 18299172 +
Aed Aed1g0377 Chr1 5535526 5551680 +
Aev Aev10g1148 Chr10 15231569 15236188 +
Ahy Ahy18g1747 Chr18 56269255 56275145 -
Aip Aip08g01956 Chr08 54935775 54941679 -
Amo Amo18g2207 Chr18 67133132 67138660 -
Apr Apr2g0571 Chr2 6736959 6741908 -
Bva Bva09g01050 Chr09 5373736 5378759 -
Bva Bva07g01496 Chr07 14836856 14841992 +
Car Car01g01856 Chr01 42680922 42686777 +
Cca Cca10g01302 Chr10 17839930 17846051 -
Dod Dod10g0769 Chr10 22819226 22825053 +
Gma Gma08g01603 Chr08 14216471 14221561 +
Gma Gma15g02405 Chr15 51122136 51127179 -
Gso Gso8g1443 Chr8 14009607 14015138 +
Gso Gso8g1443 Chr8 14009607 14015138 +
Lal Lal20g0431 Chr20 3493570 3499528 -
Lja Lja3g3886 Chr3 76603924 76608963 -
Mal Mal4g1820 Chr4 34403848 34409503 -
Mtr Mtr2g2346 Chr2 35458938 35464896 +
Ssu Ssu8g1374 Chr8 26274240 26279252 -
Tpr Tpr7g3250 Chr7 40263359 40269052 +
Tsu Tsu02g03988 Chr02 46334276 46339461 +
Vvi Vvi19g1142 Chr19 18332077 18337817 -
Lal Lal9g0578 Chr9 3892390 3896412 +
Vvi Vvi19g1143 Chr19 18355489 18355749 +
Vvi Vvi19g1144 Chr19 18381367 18399477 -
Vvi Vvi19g1145 Chr19 18432171 18444984 -
Acco Acco01g3091 Chr01 48439334 48446350 +
Accr Accr1g02757 Chr1 64198173 64205094 +
Adu Adu07g02163 Chr07 71609495 71618217 +
Aev Aev10g1146 Chr10 15217918 15223889 +
Ahy Ahy18g1748 Chr18 56792860 56801504 -
Aip Aip08g01957 Chr08 55426915 55436200 -
Alju Alju02g0944 Chr02 7125830 7132991 -
Amo Amo18g2211 Chr18 67595424 67621227 -
Apr Apr2g0572 Chr2 6743493 6752259 -
Arst Arst7g02753 Chr7 70461145 70469810 +
Bisa Bisa12g0355 Chr12 4762979 4771758 +
Bva Bva09g01053 Chr09 5382655 5390998 -
Bva Bva07g01495 Chr07 14828868 14836319 +
Car Car01g01855 Chr01 42669537 42677855 +
Cca Cca10g01303 Chr10 17849067 17858440 -
Dere Dere08g0210 Chr08 3783401 3792151 +
Dod Dod10g0768 Chr10 22808101 22816492 +
Enph Enph3g0820 Chr3 29526833 29535937 +
Glsi Glsi14g0830 Chr14 9692510 9702271 +
Gma Gma08g01602 Chr08 14204438 14213125 +
Gma Gma15g02407 Chr15 51131214 51140937 -
Gso Gso8g1442 Chr8 13998013 14006679 +
Gso Gso8g1442 Chr8 13998013 14006679 +
Lal Lal1g1565 Chr1 18009674 18018030 +
Lal Lal20g0432 Chr20 3500897 3508310 -
Lasa Lasa1g04696 Chr1 769826985 769832155 +
Lele Lele09g0522 Chr09 3875447 3882076 +
Lele Lele10g0486 Chr10 3460819 3467419 +
Lele Lele11g0527 Chr11 5219898 5230934 +
Lele Lele12g0794 Chr12 15990318 15996928 -
Lja Lja3g3889 Chr3 76653225 76662045 -
Mal Mal4g1821 Chr4 34415138 34422462 -
Mibi Mibi01g0836 Chr01 8304821 8312504 -
Mtr Mtr2g2345 Chr2 35445777 35453537 +
Phco Phco10g00547 Chr10 5991160 5999584 -
Prci Prci7g1597 Chr7 31738828 31748283 +
Pste Pste3g01974 Chr3 13436392 13446053 +
Pvu Pvu5g0564 Chr5 7109713 7118360 -
Spst Spst5g01627 Chr5 51027720 51035706 -
Ssu Ssu8g1375 Chr8 26282514 26296860 -
Sto Sto7g0058 Chr7 488624 497256 +
Tpr Tpr7g3249 Chr7 40247745 40254812 +
Tsu Tsu02g03987 Chr02 46324445 46331429 +
Vimu Vimu4g01692 Chr4 18378825 18393263 -
Vvi Vvi19g1146 Chr19 18546013 18546283 -
Vvi Vvi19g1147 Chr19 18548919 18549949 -
Vvi Vvi19g1148 Chr19 18550102 18552220 -
Vvi Vvi19g1149 Chr19 18583383 18595449 -