Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi19g1130 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1131 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1132 . . . . Adu07g02171 . Aed1g0378 . . . Ahy18g1733 . Aip08g01927 . . . . . Apr2g0570 . Arst7g02763 . . . . . Bva09g01048 Bva07g01497 Car01g01857 . Cca10g01301 . . . Dod10g0771 . . . . . Gma08g01604 Gma15g02404 . . Gso8g1444 Gso8g1444 . . Lal9g0596 . . Lal20g0430 . . . . . . . . . . Lasa1g04700 . . . . . . . . . Lja3g3884 Lja3g4953 Mal4g1819 . . . . . . . Mtr2g2347 . . . Phco10g00545 . . . . . Pste3g02000 . Pte17g00249 Pte15g01585 . . . . Pvu5g0562 . . . . . Spst5g01625 . Ssu8g1373 . . Sto7g0059 Tpr7g3267 . . . Tsu02g03993 . . . . . Vimu4g01688 . . . . . . .
Vvi19g1133 . . . . . . . . . . . . . . . . . . . Apr5g0837 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lal1g0637 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1134 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1135 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1136 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1137 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1138 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1139 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Pste Pste3g02000 Chr3 13671591 13673417 -
Vvi Vvi19g1130 Chr19 18056453 18061141 +
Vvi Vvi19g1131 Chr19 18097730 18098851 -
Vvi Vvi19g1132 Chr19 18129430 18130854 -
Adu Adu07g02171 Chr07 72037648 72041722 +
Aed Aed1g0378 Chr1 5557430 5558998 +
Ahy Ahy18g1733 Chr18 54254571 54256573 -
Aip Aip08g01927 Chr08 53105991 53107678 -
Apr Apr2g0570 Chr2 6728896 6730305 -
Arst Arst7g02763 Chr7 70889111 70890978 +
Bva Bva09g01048 Chr09 5360458 5362419 -
Bva Bva07g01497 Chr07 14848050 14849549 +
Car Car01g01857 Chr01 42697764 42699443 +
Cca Cca10g01301 Chr10 17823470 17825199 -
Dod Dod10g0771 Chr10 22907551 22909125 +
Gma Gma08g01604 Chr08 14230965 14234529 +
Gma Gma15g02404 Chr15 51110970 51112406 -
Gso Gso8g1444 Chr8 14023433 14027305 +
Gso Gso8g1444 Chr8 14023433 14027305 +
Lal Lal9g0596 Chr9 4014319 4018341 -
Lal Lal20g0430 Chr20 3481963 3483381 -
Lasa Lasa1g04700 Chr1 770156229 770157668 +
Lja Lja3g3884 Chr3 76513827 76515456 -
Lja Lja3g4953 Chr3 91712521 91719914 -
Mal Mal4g1819 Chr4 34391395 34392831 -
Mtr Mtr2g2347 Chr2 35484007 35485686 +
Phco Phco10g00545 Chr10 5966576 5967991 -
Pste Pste3g02000 Chr3 13671591 13673417 -
Pte Pte17g00249 Chr17 3349254 3350947 +
Pte Pte15g01585 Chr15 13474120 13475863 +
Pvu Pvu5g0562 Chr5 7070209 7071630 -
Spst Spst5g01625 Chr5 51006217 51007629 -
Ssu Ssu8g1373 Chr8 26261880 26263280 -
Sto Sto7g0059 Chr7 497637 512525 +
Tpr Tpr7g3267 Chr7 40423022 40424765 +
Tsu Tsu02g03993 Chr02 46378458 46379934 +
Vimu Vimu4g01688 Chr4 18324672 18326142 +
Vvi Vvi19g1133 Chr19 18196015 18198272 +
Apr Apr5g0837 Chr5 12103371 12105960 -
Lal Lal1g0637 Chr1 4110033 4117506 +
Vvi Vvi19g1134 Chr19 18198519 18198662 +
Vvi Vvi19g1135 Chr19 18219094 18221860 -
Vvi Vvi19g1136 Chr19 18233650 18234183 +
Vvi Vvi19g1137 Chr19 18235938 18236195 +
Vvi Vvi19g1138 Chr19 18240229 18240658 -
Vvi Vvi19g1139 Chr19 18255242 18255709 +