Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi19g1120 Acco01g3120 . Accr1g02769 . Adu07g02196 . . . . . . . . . Alju02g0923 . . . . . Arst7g02800 . . . Bisa12g0383 . . . . . . . Dere08g0230 . . . Enph3g0833 . Glsi14g0849 . . . . . . . . . . Lal1g1568 . . . . . . . . . . . . Lasa1g04720 . Lele09g0542 Lele10g0501 Lele11g0549 Lele12g0778 . . . . . . . . . . . . Mibi01g0817 . . . . . Phco10g00524 . Prci7g1631 . . . Pste3g02006 . Pte17g00257 . . . . . Pvu5g0536 . . . . . Spst5g01563 . . . . . . . . . . . . . . . Vimu4g01645 . . . . . . .
Vvi19g1121 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1122 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1123 Acco01g3117 . Accr1g02766 . Adu07g02191 . . . . . . . . . Alju02g0927 . . . . . Arst7g02795 . . . Bisa12g0379 . . . . . . . . . . . Enph3g0830 . Glsi14g0845 . . . . . . . . . . Lal1g1566 . . . . . . . . . . . . Lasa1g04717 . Lele09g0539 Lele10g0497 Lele11g0546 Lele12g0784 . . . . . . . . . . . . Mibi01g0821 . . . . . . . Prci7g1625 . . . Pste3g02003 . . Pte15g01590 . . . . Pvu5g0542 . . . . . Spst5g01567 . . . . . . . . . . . . . . . Vimu4g01652 . . . . . . .
Vvi19g1124 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1125 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Psa1g0025 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1126 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Psa1g0026 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1127 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1128 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi19g1129 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi19g1120 Chr19 17510564 17514297 +
Acco Acco01g3120 Chr01 48709127 48712075 +
Accr Accr1g02769 Chr1 64400724 64403679 +
Adu Adu07g02196 Chr07 72584677 72589928 +
Alju Alju02g0923 Chr02 6988411 6991333 -
Arst Arst7g02800 Chr7 71437138 71441763 +
Bisa Bisa12g0383 Chr12 5303836 5306605 +
Dere Dere08g0230 Chr08 4089917 4093087 +
Enph Enph3g0833 Chr3 29611662 29616925 +
Glsi Glsi14g0849 Chr14 9937229 9941992 +
Lal Lal1g1568 Chr1 18044140 18052519 +
Lasa Lasa1g04720 Chr1 772565960 772568348 +
Lele Lele09g0542 Chr09 4047518 4052092 +
Lele Lele10g0501 Chr10 3549529 3553443 +
Lele Lele11g0549 Chr11 5399320 5403845 +
Lele Lele12g0778 Chr12 15891203 15895037 -
Mibi Mibi01g0817 Chr01 8087101 8090107 -
Phco Phco10g00524 Chr10 5714271 5717614 -
Prci Prci7g1631 Chr7 31984070 31987521 +
Pste Pste3g02006 Chr3 13709172 13715091 +
Pte Pte17g00257 Chr17 3415943 3419470 +
Pvu Pvu5g0536 Chr5 6647720 6652553 -
Spst Spst5g01563 Chr5 49986026 49990522 -
Vimu Vimu4g01645 Chr4 17811349 17815427 -
Vvi Vvi19g1121 Chr19 17592915 17623936 -
Vvi Vvi19g1122 Chr19 17645484 17647313 +
Vvi Vvi19g1123 Chr19 17668878 17700093 -
Acco Acco01g3117 Chr01 48672010 48678662 -
Accr Accr1g02766 Chr1 64376303 64380939 -
Adu Adu07g02191 Chr07 72486725 72494119 -
Alju Alju02g0927 Chr02 7005579 7013476 +
Arst Arst7g02795 Chr7 71338454 71345775 -
Bisa Bisa12g0379 Chr12 5276460 5284306 -
Enph Enph3g0830 Chr3 29588200 29595072 -
Glsi Glsi14g0845 Chr14 9915157 9923458 -
Lal Lal1g1566 Chr1 18020749 18028090 -
Lasa Lasa1g04717 Chr1 772030774 772043835 -
Lele Lele09g0539 Chr09 4033746 4038452 -
Lele Lele10g0497 Chr10 3530183 3536187 -
Lele Lele11g0546 Chr11 5380361 5384811 -
Lele Lele12g0784 Chr12 15907983 15912335 +
Mibi Mibi01g0821 Chr01 8132566 8136355 +
Prci Prci7g1625 Chr7 31960513 31967781 -
Pste Pste3g02003 Chr3 13678654 13688657 -
Pte Pte15g01590 Chr15 13515289 13521151 -
Pvu Pvu5g0542 Chr5 6772827 6784279 +
Spst Spst5g01567 Chr5 50013977 50035555 +
Vimu Vimu4g01652 Chr4 17853399 17861041 +
Vvi Vvi19g1124 Chr19 17732097 17757298 +
Vvi Vvi19g1125 Chr19 17767883 17771108 -
Psa Psa1g0025 Chr1 759469 763581 -
Vvi Vvi19g1126 Chr19 17850825 17876292 -
Psa Psa1g0026 Chr1 794790 799725 +
Vvi Vvi19g1127 Chr19 17877133 17888209 -
Vvi Vvi19g1128 Chr19 17895236 17903778 -
Vvi Vvi19g1129 Chr19 17994574 17994912 +