Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
Valid last name is required.
    
Valid last name is required.
    
Valid line number is required.
Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi1g0231 . . . . . . Aed11g0578 . . . . . . . . . . . . . . . . . . . Bva01g01819 Bva11g00841 . . Cca06g00444 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Ssu2g1357 . . . . . . . . . . . . . . . . . . . . .
Vvi1g0232 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja2g1350 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0233 . . . . . . Aed11g0583 . . . . . . . . . . . Apr7g1303 . . . . . . . Bva01g01815 Bva11g00838 Car02g00952 . Cca06g00440 . . . . . . . . . . Gma01g00914 . . . . . . . Lal22g0647 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0234 . . . . . Adu05g03221 . . . . . . . . . . . . . . . . . . . . . . . . . . . Dere13g1587 . . . . . Glsi09g1436 Gma02g01177 . . . Gso2g1066 . . . . . Lal18g0977 . . . . . . . . . . . . . . . . . . . . . Lja2g1352 . . . . . . . . . . . . . . . . . . . . Pste1g02972 . . . . . Pumo8g00780 . Pvu3g0245 . Rops1g00581 . Seca10g01976 . Spst2g01812 . . Sto11g0783 . . . . . . . . . . . . . . Viun2g00424 . . . .
Vvi1g0235 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0236 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0237 . . . . . . . . . . . . . . . . . . Apr7g1302 . . . . . . . Bva01g01814 Bva11g00837 . . Cca06g00439 . . . . . . . . . Gma02g01178 . . . Gso2g1067 . . . Lal6g0722 Lal22g0646 . . . . . . . . . . . . . . . . . . . . . . Lja2g1353 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Ssu2g1355 . . Sto6g2857 . . . . . . . . . . . . . . . . . .
Vvi1g0238 . Acco13g0833 . Accr12g00781 . . . Aed1g1814 . . . . . . . Alju13g1330 . . . . . . . Bach2g01904 . Bisa02g1562 Bva01g01812 Bva11g00834 Car04g01605 . . Cca02g02703 . Dere14g0328 . . . Enph5g0670 . Glsi13g1027 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lele17g0853 Lele18g0672 Lele19g0713 Lele20g0744 . . Mal1g0287 . . . . . . Mibi13g0813 Mtr1g4254 . . . . Phco7g02403 . Prci9g1396 Psa6g5293 . . Pste2g00341 . . . . . Pumo10g02312 . Pvu9g2081 . Rops10g00392 . Seca4g03432 . Spst9g02458 . Ssu7g0271 . Sto6g2854 Tpr1g0248 . . . Tsu01g04936 . . Vian4g00605 . . . Vimu10g00820 . Viun9g00841 . . . Vra8g2599
Vvi1g0239 . Acco13g0834 . Accr12g00782 . . . . . . . . . . . Alju13g1329 . . Apr7g1300 . . Arst10g03612 . Bach2g01903 . Bisa02g1563 . Bva11g00833 Car02g00955 . Cca06g00437 . . Dere14g0327 . . . Enph5g0671 . Glsi13g1026 Gma02g01180 Gma01g00911 . . Gso2g1069 Gso2g1069 . . Lal6g0721 Lal22g0644 . . . . . . . . . . . . . Lasa1g04241 . . . . . . . . Lja2g1356 . . . . . . . . Mibi13g0814 . . . . . Phco7g02402 . Prci9g1394 Psa2g2040 . . Pste2g00340 . . . Pte1g00876 . Pumo10g02190 . Pvu9g2080 . Rops10g00501 . Seca4g03283 . Spst9g02457 . . Sto11g0782 Sto6g2852 . . . . . . . Vian4g00606 . Vifa2g00602 . Vimu10g00821 . Viun9g00842 . . . .
Vvi1g0240 . . . . . . . . . . . . . . . . . . Apr7g1299 . . . . . . . Bva01g01810 Bva11g00832 . . Cca06g00432 . . . . . . . . . Gma02g01183 Gma01g00908 . . Gso2g1072 Gso2g1072 . . Lal6g0720 Lal22g0643 . . . . . . . . . . . . . . . . . . . . . . Lja2g1357 . . . . . . . . . . . . . . . . . . . . Pste1g02950 . . . . . Pumo8g00768 . Pvu3g0250 . Rops1g00568 . Seca10g01983 . Spst2g01819 Ssu2g1349 . Sto11g0780 . . . . . . . . Vian10g01728 . . . . . Viun2g00431 . . Vra11g1435 .
   
Previous Page 24 of 2817 Next

DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi1g0231 Chr1 2171001 2171522 -
Aed Aed11g0578 Chr11 5433111 5433533 -
Bva Bva01g01819 Chr01 18837765 18838610 +
Bva Bva11g00841 Chr11 10945493 10946155 +
Cca Cca06g00444 Chr06 13726028 13726695 +
Ssu Ssu2g1357 Chr2 57370912 57371316 +
Vvi Vvi1g0232 Chr1 2187458 2187979 -
Lja Lja2g1350 Chr2 12921528 12922142 -
Vvi Vvi1g0233 Chr1 2197499 2201727 +
Aed Aed11g0583 Chr11 5475849 5481608 +
Apr Apr7g1303 Chr7 20116894 20122285 -
Bva Bva01g01815 Chr01 18821156 18824871 -
Bva Bva11g00838 Chr11 10932691 10936928 -
Car Car02g00952 Chr02 16354185 16368755 -
Cca Cca06g00440 Chr06 13621439 13645266 -
Gma Gma01g00914 Chr01 29341066 29358261 -
Lal Lal22g0647 Chr22 4600634 4606346 -
Vvi Vvi1g0234 Chr1 2202688 2225200 +
Adu Adu05g03221 Chr05 103969503 103975893 -
Dere Dere13g1587 Chr13 21613334 21628170 -
Glsi Glsi09g1436 Chr09 10754920 10759265 -
Gma Gma02g01177 Chr02 13226890 13235204 +
Gso Gso2g1066 Chr2 13010651 13017112 +
Lal Lal18g0977 Chr18 12703513 12710037 -
Lja Lja2g1352 Chr2 12933091 12938874 -
Pste Pste1g02972 Chr1 13020921 13025471 -
Pumo Pumo8g00780 Chr8 30809066 30821983 -
Pvu Pvu3g0245 Chr3 2095284 2102518 +
Rops Rops1g00581 Chr1 14519494 14525515 +
Seca Seca10g01976 Chr10 22290279 22295202 -
Spst Spst2g01812 Chr2 17158560 17161696 -
Sto Sto11g0783 Chr11 8727654 8734112 +
Viun Viun2g00424 Chr2 8414430 8419223 +
Vvi Vvi1g0235 Chr1 2229196 2229513 +
Vvi Vvi1g0236 Chr1 2237829 2238071 -
Vvi Vvi1g0237 Chr1 2242232 2245334 +
Apr Apr7g1302 Chr7 20103911 20110088 -
Bva Bva01g01814 Chr01 18813655 18819293 -
Bva Bva11g00837 Chr11 10926530 10930891 -
Cca Cca06g00439 Chr06 13596423 13603364 -
Gma Gma02g01178 Chr02 13249894 13255145 +
Gso Gso2g1067 Chr2 13031574 13037280 +
Lal Lal6g0722 Chr6 4820804 4824994 -
Lal Lal22g0646 Chr22 4589290 4595405 -
Lja Lja2g1353 Chr2 12944043 12949469 +
Ssu Ssu2g1355 Chr2 57216156 57220767 -
Sto Sto6g2857 Chr6 35814665 35819740 -
Vvi Vvi1g0238 Chr1 2251802 2252290 +
Acco Acco13g0833 Chr13 6326433 6326924 +
Accr Accr12g00781 Chr12 7615932 7616423 +
Aed Aed1g1814 Chr1 15551274 15556562 -
Alju Alju13g1330 Chr13 32058991 32059482 -
Bach Bach2g01904 Chr2 26964349 26964822 -
Bisa Bisa02g1562 Chr02 27465972 27466457 +
Bva Bva01g01812 Chr01 18809873 18810766 -
Bva Bva11g00834 Chr11 10923528 10924349 -
Car Car04g01605 Chr04 16586623 16588552 +
Cca Cca02g02703 Chr02 48448353 48453140 +
Dere Dere14g0328 Chr14 3439894 3441778 -
Enph Enph5g0670 Chr5 5389882 5390502 +
Glsi Glsi13g1027 Chr13 28385847 28388384 -
Lele Lele17g0853 Chr17 19871543 19873578 -
Lele Lele18g0672 Chr18 4046754 4049456 +
Lele Lele19g0713 Chr19 4137402 4139414 +
Lele Lele20g0744 Chr20 14442768 14446879 -
Mal Mal1g0287 Chr1 3104417 3105972 -
Mibi Mibi13g0813 Chr13 10327963 10328454 +
Mtr Mtr1g4254 Chr1 54252555 54254898 +
Phco Phco7g02403 Chr7 41949877 41950413 +
Prci Prci9g1396 Chr9 27317733 27318344 -
Psa Psa6g5293 Chr6 465167297 465168623 +
Pste Pste2g00341 Chr2 2649849 2650385 -
Pumo Pumo10g02312 Chr10 33279015 33279497 +
Pvu Pvu9g2081 Chr9 29861786 29863978 +
Rops Rops10g00392 Chr10 10774301 10774567 -
Seca Seca4g03432 Chr4 59888297 59888779 +
Spst Spst9g02458 Chr9 58025955 58026491 -
Ssu Ssu7g0271 Chr7 4458923 4465301 -
Sto Sto6g2854 Chr6 35801405 35801728 -
Tpr Tpr1g0248 Chr1 2016611 2018883 -
Tsu Tsu01g04936 Chr01 56304243 56305034 +
Vian Vian4g00605 Chr4 7320204 7320737 -
Vimu Vimu10g00820 Chr10 7268037 7269190 -
Viun Viun9g00841 Chr9 6331983 6332984 -
Vra Vra8g2599 Chr8 43928773 43932466 +
Vvi Vvi1g0239 Chr1 2254069 2261220 -
Acco Acco13g0834 Chr13 6327855 6333778 -
Accr Accr12g00782 Chr12 7617420 7623563 -
Alju Alju13g1329 Chr13 32052575 32058241 +
Apr Apr7g1300 Chr7 20079788 20088161 +
Arst Arst10g03612 Chr10 103890676 103896625 -
Bach Bach2g01903 Chr2 26957690 26963182 +
Bisa Bisa02g1563 Chr02 27471254 27476738 -
Bva Bva11g00833 Chr11 10915735 10923080 +
Car Car02g00955 Chr02 16422752 16428974 -
Cca Cca06g00437 Chr06 13579120 13585137 +
Dere Dere14g0327 Chr14 3431796 3437622 +
Enph Enph5g0671 Chr5 5391801 5397979 -
Glsi Glsi13g1026 Chr13 28378648 28384897 +
Gma Gma02g01180 Chr02 13282188 13290086 -
Gma Gma01g00911 Chr01 29089865 29097336 +
Gso Gso2g1069 Chr2 13062938 13071890 -
Gso Gso2g1069 Chr2 13062938 13071890 -
Lal Lal6g0721 Chr6 4812276 4819490 +
Lal Lal22g0644 Chr22 4577324 4585432 +
Lasa Lasa1g04241 Chr1 719754272 719758739 +
Lja Lja2g1356 Chr2 12956033 12963217 -
Mibi Mibi13g0814 Chr13 10329813 10335618 -
Phco Phco7g02402 Chr7 41939997 41945595 +
Prci Prci9g1394 Chr9 27307238 27313275 +
Psa Psa2g2040 Chr2 200493188 200499228 -
Pste Pste2g00340 Chr2 2641869 2648681 +
Pte Pte1g00876 Chr1 17238501 17244266 -
Pumo Pumo10g02190 Chr10 29711603 29722245 +
Pvu Pvu9g2080 Chr9 29853066 29859164 +
Rops Rops10g00501 Chr10 13313199 13323735 +
Seca Seca4g03283 Chr4 56531641 56539682 -
Spst Spst9g02457 Chr9 58018291 58024254 +
Sto Sto11g0782 Chr11 8718557 8726040 +
Sto Sto6g2852 Chr6 35792979 35799442 +
Vian Vian4g00606 Chr4 7324273 7327815 -
Vifa Vifa2g00602 Chr2 131434229 131438948 +
Vimu Vimu10g00821 Chr10 7277045 7282646 -
Viun Viun9g00842 Chr9 6336185 6342622 -
Vvi Vvi1g0240 Chr1 2273651 2280023 +
Apr Apr7g1299 Chr7 20057041 20066188 -
Bva Bva01g01810 Chr01 18788511 18793501 -
Bva Bva11g00832 Chr11 10904044 10908656 -
Cca Cca06g00432 Chr06 13511800 13518914 +
Gma Gma02g01183 Chr02 13331878 13338400 +
Gma Gma01g00908 Chr01 28993094 29002951 -
Gso Gso2g1072 Chr2 13110196 13115404 +
Gso Gso2g1072 Chr2 13110196 13115404 +
Lal Lal6g0720 Chr6 4769831 4777351 -
Lal Lal22g0643 Chr22 4554323 4560742 -
Lja Lja2g1357 Chr2 12972182 12980201 +
Pste Pste1g02950 Chr1 12822698 12835018 -
Pumo Pumo8g00768 Chr8 30077740 30085264 -
Pvu Pvu3g0250 Chr3 2159809 2161832 +
Rops Rops1g00568 Chr1 14333312 14341754 -
Seca Seca10g01983 Chr10 22373813 22382427 +
Spst Spst2g01819 Chr2 17290827 17296790 +
Ssu Ssu2g1349 Chr2 57024664 57031874 -
Sto Sto11g0780 Chr11 8698969 8705745 -
Vian Vian10g01728 Chr10 28884750 28890858 +
Viun Viun2g00431 Chr2 8687501 8694854 +
Vra Vra11g1435 Chr11 17482596 17490517 -
Adu Adu05g03221 Chr05 103969503 103975893 -
Dere Dere13g1587 Chr13 21613334 21628170 -
Glsi Glsi09g1436 Chr09 10754920 10759265 -
Pste Pste1g02972 Chr1 13020921 13025471 -
Pumo Pumo8g00780 Chr8 30809066 30821983 -
Pvu Pvu3g0245 Chr3 2095284 2102518 +
Rops Rops1g00581 Chr1 14519494 14525515 +
Seca Seca10g01976 Chr10 22290279 22295202 -
Spst Spst2g01812 Chr2 17158560 17161696 -
Viun Viun2g00424 Chr2 8414430 8419223 +
Seca Seca4g03432 Chr4 59888297 59888779 +