Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi1g0221 . Acco12g1075 . Accr10g00953 . Adu05g03228 . . . . . . . . . Alju12g1020 . . Apr7g1310 . . . . Bach10g01161 . Bisa01g2674 Bva01g01826 Bva11g00846 . . . . . Dere13g1584 . . . Enph14g1374 . Glsi09g1430 Gma02g01172 . . . Gso2g1062 . . . Lal6g0733 . . . . . Lan11g0744 . . . . . . . . . . . . . Lele53g0687 Lele54g0693 Lele55g0801 Lele56g0745 Lja2g1344 . . . . . . . . Mibi10g0959 . . . . . Phco8g03080 . Prci5g1243 . . . . . . . . . . . Pvu3g0355 . . . . . . . . Sto11g0786 . . . . . . . . . . . . Vimu7g04164 . . . . . .
Vvi1g0222 . . . . . Adu05g03227 Aed11g0571 . . . . . . . . . . . Apr7g1309 . . . . . . Bisa01g2673 Bva01g01824 Bva11g00845 Car02g00944 . Cca06g00450 . . Dere13g1586 . . . . . Glsi09g1434 . . . . . . . . Lal6g0732 Lal22g0648 . . . . Lan11g0743 Lan11g0743 . . . . . Lapu2g01202 . . . . . . . . . . Lja2g1346 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Pvu3g0354 . . . . . . Ssu2g1363 . . Sto6g2866 . . . . . . . . . . . Vimu7g04165 . . . . . .
Vvi1g0223 . . . . . Adu05g03226 . . . . . . . . . . . . Apr7g1308 . . . . . . . Bva01g01822 Bva11g00844 . . . . . . . . . . . . Gma02g01173 . . . Gso2g1063 . . . . . Lal18g0975 . . . . . . . . . . Lapu2g01202 . . . . . . . . . . Lja2g1347 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Pvu3g0353 . . . Seca10g02458 . . . . Sto11g0784 Sto6g2864 . . . . . . . Vian10g01702 . . . Vimu7g04166 . . . . . .
Vvi1g0224 . . . . . Adu05g03214 Aed11g0575 . . . . . . . . . . . Apr7g1306 . . . . . . . Bva01g01820 . Car02g00948 . Cca06g00447 . . . . . . . . . Gma02g01174 Gma01g00922 . . Gso2g1064 Gso2g1064 . . . . . . . . . . . . . . . . . . . . . . . . . . Lja2g1348 . . . . . . . . . . . . . . Phco8g03085 . . . . . . . . . . . Pumo8g00790 . Pvu3g0351 . Rops1g00596 . Seca10g01970 . . Ssu2g1361 . . Sto6g2861 . . . . . . . . . Vifa1g09200 . Vimu7g04171 . . . . . .
Vvi1g0225 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car02g01116 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0226 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car02g01115 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco8g03086 . . . . . . . . . . . Pumo8g00786 . Pvu3g0350 . Rops1g00586 . Seca10g01973 . . . . . . . . . . . . . . . . . Vimu7g04174 . . . . . .
Vvi1g0227 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0228 . . . . . . Aed11g0576 . . . . . . . . . . . Apr7g1305 . . . . . . . . Bva11g00842 Car02g01114 . Cca06g00446 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Ssu2g1359 . . . . . . . . . . . . . . . . . . . . .
Vvi1g0229 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Car02g01113 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0230 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi1g0221 Chr1 2088886 2090034 +
Acco Acco12g1075 Chr12 11550750 11551868 +
Accr Accr10g00953 Chr10 29727605 29728720 -
Adu Adu05g03228 Chr05 104097996 104099778 -
Alju Alju12g1020 Chr12 30446675 30447763 -
Apr Apr7g1310 Chr7 20182810 20184555 -
Bach Bach10g01161 Chr10 8740896 8742071 +
Bisa Bisa01g2674 Chr01 52387136 52391287 -
Bva Bva01g01826 Chr01 18868550 18870702 -
Bva Bva11g00846 Chr11 10964125 10965279 -
Dere Dere13g1584 Chr13 21562831 21563937 +
Enph Enph14g1374 Chr14 15812330 15813430 +
Glsi Glsi09g1430 Chr09 10729734 10730972 +
Gma Gma02g01172 Chr02 13149853 13151742 +
Gso Gso2g1062 Chr2 12937232 12938482 +
Lal Lal6g0733 Chr6 4889398 4890525 -
Lan Lan11g0744 Chr11 6710134 6712288 -
Lele Lele53g0687 Chr53 17010613 17011614 -
Lele Lele54g0693 Chr54 13858783 13859901 -
Lele Lele55g0801 Chr55 5423900 5425018 +
Lele Lele56g0745 Chr56 5627800 5628918 +
Lja Lja2g1344 Chr2 12852444 12854500 +
Mibi Mibi10g0959 Chr10 27696281 27698861 -
Phco Phco8g03080 Chr8 45184519 45185706 +
Prci Prci5g1243 Chr5 31600750 31602766 -
Pvu Pvu3g0355 Chr3 3393196 3394383 -
Sto Sto11g0786 Chr11 8755370 8757872 -
Vimu Vimu7g04164 Chr7 40322866 40328057 +
Vvi Vvi1g0222 Chr1 2095594 2096890 -
Adu Adu05g03227 Chr05 104075888 104077923 -
Aed Aed11g0571 Chr11 5369593 5371416 +
Apr Apr7g1309 Chr7 20177610 20180276 -
Bisa Bisa01g2673 Chr01 52359863 52363188 -
Bva Bva01g01824 Chr01 18862524 18864363 -
Bva Bva11g00845 Chr11 10960512 10962035 -
Car Car02g00944 Chr02 16073426 16075420 -
Cca Cca06g00450 Chr06 13879394 13886139 -
Dere Dere13g1586 Chr13 21610650 21612279 +
Glsi Glsi09g1434 Chr09 10743455 10744938 +
Lal Lal6g0732 Chr6 4885975 4887699 -
Lal Lal22g0648 Chr22 4607786 4609669 -
Lan Lan11g0743 Chr11 6706572 6708466 -
Lan Lan11g0743 Chr11 6706572 6708466 -
Lapu Lapu2g01202 Chr2 21492399 21501865 -
Lja Lja2g1346 Chr2 12858614 12863300 +
Pvu Pvu3g0354 Chr3 3387841 3389349 -
Ssu Ssu2g1363 Chr2 57509515 57511157 -
Sto Sto6g2866 Chr6 35882050 35887156 -
Vimu Vimu7g04165 Chr7 40332944 40334255 +
Vvi Vvi1g0223 Chr1 2100032 2101337 +
Adu Adu05g03226 Chr05 104057024 104058640 +
Apr Apr7g1308 Chr7 20170776 20175425 -
Bva Bva01g01822 Chr01 18855818 18857471 -
Bva Bva11g00844 Chr11 10957883 10959073 -
Gma Gma02g01173 Chr02 13154359 13156502 +
Gso Gso2g1063 Chr2 12940571 12942545 +
Lal Lal18g0975 Chr18 12689577 12692638 -
Lapu Lapu2g01202 Chr2 21492399 21501865 -
Lja Lja2g1347 Chr2 12865555 12867528 +
Pvu Pvu3g0353 Chr3 3382610 3384229 -
Seca Seca10g02458 Chr10 29856951 29859444 -
Sto Sto11g0784 Chr11 8734914 8736145 -
Sto Sto6g2864 Chr6 35878314 35880907 -
Vian Vian10g01702 Chr10 28406911 28408251 -
Vimu Vimu7g04166 Chr7 40336133 40337673 +
Vvi Vvi1g0224 Chr1 2104263 2125886 +
Adu Adu05g03214 Chr05 103859685 103882521 +
Aed Aed11g0575 Chr11 5397434 5414228 +
Apr Apr7g1306 Chr7 20144279 20169473 -
Bva Bva01g01820 Chr01 18839961 18852725 -
Car Car02g00948 Chr02 16144717 16182689 +
Cca Cca06g00447 Chr06 13813595 13853096 -
Gma Gma02g01174 Chr02 13166562 13191975 +
Gma Gma01g00922 Chr01 29624607 29693448 -
Gso Gso2g1064 Chr2 12952655 12977685 +
Gso Gso2g1064 Chr2 12952655 12977685 +
Lja Lja2g1348 Chr2 12876559 12899247 +
Phco Phco8g03085 Chr8 45236173 45237310 +
Pumo Pumo8g00790 Chr8 30992298 31029861 -
Pvu Pvu3g0351 Chr3 3353676 3377342 -
Rops Rops1g00596 Chr1 14879437 14904933 -
Seca Seca10g01970 Chr10 22176281 22195273 +
Ssu Ssu2g1361 Chr2 57447988 57490292 -
Sto Sto6g2861 Chr6 35857668 35874073 -
Vifa Vifa1g09200 Chr1 1455060332 1455082212 -
Vimu Vimu7g04171 Chr7 40358613 40365801 +
Vvi Vvi1g0225 Chr1 2131271 2131795 -
Car Car02g01116 Chr02 31520298 31520756 -
Vvi Vvi1g0226 Chr1 2136955 2137455 -
Car Car02g01115 Chr02 31492798 31493223 -
Phco Phco8g03086 Chr8 45243036 45243440 -
Pumo Pumo8g00786 Chr8 30923865 30925081 +
Pvu Pvu3g0350 Chr3 3348176 3348881 +
Rops Rops1g00586 Chr1 14667271 14667792 +
Seca Seca10g01973 Chr10 22229240 22229530 +
Vimu Vimu7g04174 Chr7 40393807 40394211 -
Vvi Vvi1g0227 Chr1 2142149 2143016 +
Vvi Vvi1g0228 Chr1 2145560 2145967 -
Aed Aed11g0576 Chr11 5413870 5415916 -
Apr Apr7g1305 Chr7 20137566 20137943 +
Bva Bva11g00842 Chr11 10953922 10954755 +
Car Car02g01114 Chr02 31481250 31481801 -
Cca Cca06g00446 Chr06 13808888 13809522 +
Ssu Ssu2g1359 Chr2 57428166 57428576 +
Vvi Vvi1g0229 Chr1 2147544 2148062 -
Car Car02g01113 Chr02 31457902 31458306 -
Vvi Vvi1g0230 Chr1 2157105 2162946 +
Bisa Bisa01g2673 Chr01 52359863 52363188 -
Dere Dere13g1586 Chr13 21610650 21612279 +
Glsi Glsi09g1434 Chr09 10743455 10744938 +