Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi1g0241 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0242 . Acco12g1078 . Accr10g00949 . . Aed11g0594 . . . . . . . . Alju12g1016 . . Apr7g1297 . . . . . . Bisa01g2670 Bva01g01808 Bva11g00830 . . Cca06g00428 . . Dere13g1597 . . . . . Glsi09g1442 Gma02g01185 Gma01g00906 . . Gso2g1075 Gso2g1075 . . . . . . . . . . . . . . . . . . . . . . Lele53g0684 Lele54g0690 Lele55g0803 Lele56g0747 Lja2g1359 . . . . . . . . Mibi10g0957 . . . . . . . Prci5g1238 . . . Pste1g02948 . . . . . Pumo8g00766 . Pvu3g0252 . Rops1g00565 . Seca10g01985 . Spst2g01820 Ssu2g1347 . . . . . . . . . . Vian10g01730 . . . Vimu7g04133 . Viun2g00434 . . Vra11g1433 .
Vvi1g0243 . . . . . Adu05g03207 Aed11g0595 . . . . . . . . . . . Apr7g1296 . . . . Bach10g01170 . . Bva01g01807 Bva11g00829 . . Cca06g00427 . . . . . . . . . Gma02g01186 Gma01g00905 . . Gso2g1076 Gso2g1076 . . Lal6g0718 Lal22g0642 . . . . . . . . . . . . . . . . . . . . . . Lja2g1360 . . . . . . . . . . . . . . . . . . . . Pste1g02946 . . . . . Pumo8g00765 . Pvu3g0253 . Rops1g00564 . Seca10g01986 . Spst2g01821 Ssu2g1345 . . Sto6g2848 . . . . . . . Vian10g01731 . . . Vimu7g04131 . Viun2g00436 . . Vra11g1432 .
Vvi1g0244 . . . . . . . . . . . . . . . . . . . . . . . . . . Bva01g01806 Bva11g00828 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0245 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0246 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0247 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0248 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0249 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0250 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Vvi Vvi1g0241 Chr1 2281193 2282179 +
Vvi Vvi1g0242 Chr1 2282487 2285301 -
Acco Acco12g1078 Chr12 11592982 11595280 -
Accr Accr10g00949 Chr10 29634827 29636189 +
Aed Aed11g0594 Chr11 5860874 5865656 -
Alju Alju12g1016 Chr12 30403343 30406079 +
Apr Apr7g1297 Chr7 20051500 20056692 +
Bisa Bisa01g2670 Chr01 52270049 52273793 -
Bva Bva01g01808 Chr01 18783204 18784754 +
Bva Bva11g00830 Chr11 10900342 10903471 +
Cca Cca06g00428 Chr06 13417446 13422754 +
Dere Dere13g1597 Chr13 21769098 21772485 -
Glsi Glsi09g1442 Chr09 10807499 10810220 -
Gma Gma02g01185 Chr02 13347704 13351228 -
Gma Gma01g00906 Chr01 28942130 28946113 +
Gso Gso2g1075 Chr2 13127034 13130419 -
Gso Gso2g1075 Chr2 13127034 13130419 -
Lele Lele53g0684 Chr53 16980034 16981947 +
Lele Lele54g0690 Chr54 13830603 13833946 +
Lele Lele55g0803 Chr55 5447825 5452206 -
Lele Lele56g0747 Chr56 5643473 5644861 -
Lja Lja2g1359 Chr2 12981757 12985020 -
Mibi Mibi10g0957 Chr10 27661607 27665651 +
Prci Prci5g1238 Chr5 31550981 31554481 +
Pste Pste1g02948 Chr1 12813494 12818163 -
Pumo Pumo8g00766 Chr8 30033363 30035064 +
Pvu Pvu3g0252 Chr3 2165306 2168876 -
Rops Rops1g00565 Chr1 14328698 14331222 +
Seca Seca10g01985 Chr10 22384015 22386706 -
Spst Spst2g01820 Chr2 17297491 17303028 -
Ssu Ssu2g1347 Chr2 57009708 57017594 +
Vian Vian10g01730 Chr10 28897626 28899375 -
Vimu Vimu7g04133 Chr7 39891860 39895611 +
Viun Viun2g00434 Chr2 8707619 8719196 -
Vra Vra11g1433 Chr11 17476182 17479935 +
Vvi Vvi1g0243 Chr1 2286875 2292006 -
Adu Adu05g03207 Chr05 103771967 103781311 +
Aed Aed11g0595 Chr11 5896060 5904559 +
Apr Apr7g1296 Chr7 20040642 20046253 +
Bach Bach10g01170 Chr10 8828315 8833618 -
Bva Bva01g01807 Chr01 18777671 18782691 +
Bva Bva11g00829 Chr11 10892565 10898052 +
Cca Cca06g00427 Chr06 13402539 13409030 +
Gma Gma02g01186 Chr02 13355043 13361626 -
Gma Gma01g00905 Chr01 28914103 28919944 +
Gso Gso2g1076 Chr2 13134104 13140813 -
Gso Gso2g1076 Chr2 13134104 13140813 -
Lal Lal6g0718 Chr6 4760995 4769426 +
Lal Lal22g0642 Chr22 4548321 4553696 +
Lja Lja2g1360 Chr2 12985879 12991684 -
Pste Pste1g02946 Chr1 12782757 12789494 +
Pumo Pumo8g00765 Chr8 30019700 30026837 +
Pvu Pvu3g0253 Chr3 2172247 2178407 -
Rops Rops1g00564 Chr1 14319030 14325011 +
Seca Seca10g01986 Chr10 22392330 22398251 -
Spst Spst2g01821 Chr2 17304669 17310103 -
Ssu Ssu2g1345 Chr2 56961188 56967080 +
Sto Sto6g2848 Chr6 35738363 35743661 -
Vian Vian10g01731 Chr10 28903706 28909441 -
Vimu Vimu7g04131 Chr7 39870230 39876044 +
Viun Viun2g00436 Chr2 8794349 8800891 -
Vra Vra11g1432 Chr11 17467175 17473728 +
Vvi Vvi1g0244 Chr1 2301129 2308215 +
Bva Bva01g01806 Chr01 18758495 18763427 -
Bva Bva11g00828 Chr11 10873430 10878869 -
Vvi Vvi1g0245 Chr1 2312372 2313207 +
Vvi Vvi1g0246 Chr1 2327697 2327957 +
Vvi Vvi1g0247 Chr1 2339822 2340254 +
Vvi Vvi1g0248 Chr1 2344398 2344701 +
Vvi Vvi1g0249 Chr1 2352041 2356540 +
Vvi Vvi1g0250 Chr1 2365468 2365863 -
Pste Pste1g02946 Chr1 12782757 12789494 +