Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi1g0171 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0172 . . . . . . . . . . . . . . . . . . . Apr3g1560 . . . . . . . . Car06g01810 . . . . . . . . . . . . . . . . . . . . . . . . Lal15g0753 . . . . . . Lapu3g02329 . Lasa7g02913 . . . . . . . . . . Lja4g3552 . . Mepo2g03004 . Mesa13g02053 . . . . . Phac2g01543 . Phco4g01865 . . . . Psa7g3015 Pste3g04066 . . . . . . . Pvu2g1017 . . . . . Spst3g02303 . . . . . . . Trre7g01960 . . . . . . . Vimu11g02211 . . . Vivi5g03768 . . .
Vvi1g0173 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0174 . . . . . . . . . . . . . . . . . . . Apr3g1561 . . . . . . . . Car06g01809 . . . . . . . . . . . . . . . . . . . . . . . Lal16g0781 . . . . . . . Lapu3g02330 . Lasa7g02915 . . . . . . . . . . Lja4g3553 . . Mepo2g03005 . Mesa13g02052 . . . . . . . Phco4g01864 . . . . Psa7g3016 Pste3g04068 . . . . . . . Pvu2g1016 . . . . . Spst3g02302 . . . . . . . Trre7g01959 . . . . . . . Vimu11g02210 . . . Vivi5g03770 . . .
Vvi1g0175 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0176 . . . . . . . . . . . . . . . . . . . Apr3g1562 . . . . . . . . Car06g01807 . . . . . . . . . . . . . . . . . . . . . . . Lal16g0779 Lal15g0752 . . . . . . . . Lasa7g02916 . . . . . . . . . . Lja4g3557 . . . . . . . . . . . . Phco4g01861 . . . . Psa7g3023 . . . . . . . . Pvu2g1015 . . . . . Spst3g02301 . . . . . . . . . . . . . . . Vimu11g02209 . . . Vivi5g03773 . . .
Vvi1g0177 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0178 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0179 . . . . . . . . . . . . . . . . . . . Apr3g1563 . . . . . . . . Car06g01806 . . . . . . . . . . . . . . . . . . . . . . . . Lal15g0751 . . . . . . Lapu3g02332 . Lasa7g02919 . . . . . . . . . . Lja4g3559 . . Mepo2g03007 . Mesa13g02050 . . . . . Phac2g01540 . Phco4g01860 . . . . Psa7g3007 Pste3g04073 . . . . . . . Pvu2g1012 . . . . . Spst3g02299 . . . . . . . Trre7g01955 . . . . . . . Vimu11g02207 . . . Vivi5g03777 . . .
Vvi1g0180 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi1g0171 Chr1 1587196 1587908 -
Vvi Vvi1g0172 Chr1 1591558 1597664 -
Apr Apr3g1560 Chr3 30616287 30623399 -
Car Car06g01810 Chr06 17958957 17966064 +
Lal Lal15g0753 Chr15 5319210 5325739 +
Lapu Lapu3g02329 Chr3 44616951 44623535 -
Lasa Lasa7g02913 Chr7 558295021 558312355 -
Lja Lja4g3552 Chr4 66549277 66556331 -
Mepo Mepo2g03004 Chr2 39737769 39744676 -
Mesa Mesa13g02053 Chr13 24087988 24095256 +
Phac Phac2g01543 Chr2 14871338 14877533 +
Phco Phco4g01865 Chr4 36941978 36947628 +
Psa Psa7g3015 Chr7 218986956 218995146 -
Pste Pste3g04066 Chr3 35421572 35427833 -
Pvu Pvu2g1017 Chr2 19228413 19234342 +
Spst Spst3g02303 Chr3 66335076 66341103 +
Trre Trre7g01960 Chr7 15480545 15487413 +
Vimu Vimu11g02211 Chr11 38672057 38677389 +
Vivi Vivi5g03768 Chr5 131641165 131646965 -
Vvi Vvi1g0173 Chr1 1600526 1602399 -
Vvi Vvi1g0174 Chr1 1610200 1612639 +
Apr Apr3g1561 Chr3 30634165 30636698 +
Car Car06g01809 Chr06 17948862 17951654 -
Lal Lal16g0781 Chr16 5049841 5053390 -
Lapu Lapu3g02330 Chr3 44624067 44627784 +
Lasa Lasa7g02915 Chr7 558388087 558388616 +
Lja Lja4g3553 Chr4 66557570 66560625 +
Mepo Mepo2g03005 Chr2 39748816 39753250 +
Mesa Mesa13g02052 Chr13 24081632 24084698 -
Phco Phco4g01864 Chr4 36933247 36940132 -
Psa Psa7g3016 Chr7 219007315 219008986 +
Pste Pste3g04068 Chr3 35546494 35553909 +
Pvu Pvu2g1016 Chr2 19221783 19227464 -
Spst Spst3g02302 Chr3 66319938 66323169 -
Trre Trre7g01959 Chr7 15467276 15470902 -
Vimu Vimu11g02210 Chr11 38617178 38620432 -
Vivi Vivi5g03770 Chr5 131653670 131657497 +
Vvi Vvi1g0175 Chr1 1620551 1621773 +
Vvi Vvi1g0176 Chr1 1623550 1629932 -
Apr Apr3g1562 Chr3 30656888 30669768 -
Car Car06g01807 Chr06 17915786 17921234 +
Lal Lal16g0779 Chr16 5037618 5043888 +
Lal Lal15g0752 Chr15 5298422 5305687 +
Lasa Lasa7g02916 Chr7 558849803 558852321 -
Lja Lja4g3557 Chr4 66648232 66655802 -
Phco Phco4g01861 Chr4 36710240 36732929 +
Psa Psa7g3023 Chr7 220147961 220152490 -
Pvu Pvu2g1015 Chr2 19073334 19081125 +
Spst Spst3g02301 Chr3 66290498 66300378 +
Vimu Vimu11g02209 Chr11 38555273 38571812 +
Vivi Vivi5g03773 Chr5 131730644 131734916 -
Vvi Vvi1g0177 Chr1 1633680 1633991 -
Vvi Vvi1g0178 Chr1 1634910 1637571 -
Vvi Vvi1g0179 Chr1 1642257 1643621 +
Apr Apr3g1563 Chr3 30681433 30684751 -
Car Car06g01806 Chr06 17898438 17902708 +
Lal Lal15g0751 Chr15 5288830 5292785 +
Lapu Lapu3g02332 Chr3 44687160 44697675 -
Lasa Lasa7g02919 Chr7 559237723 559239072 -
Lja Lja4g3559 Chr4 66668711 66672546 -
Mepo Mepo2g03007 Chr2 39790500 39793559 -
Mesa Mesa13g02050 Chr13 24050909 24053014 +
Phac Phac2g01540 Chr2 14665857 14673291 +
Phco Phco4g01860 Chr4 36654889 36669287 +
Psa Psa7g3007 Chr7 218463266 218464641 +
Pste Pste3g04073 Chr3 35665698 35668869 -
Pvu Pvu2g1012 Chr2 19006939 19014292 +
Spst Spst3g02299 Chr3 66253811 66257569 +
Trre Trre7g01955 Chr7 15428599 15431250 +
Vimu Vimu11g02207 Chr11 38517495 38517963 +
Vivi Vivi5g03777 Chr5 131759342 131761511 -
Vvi Vvi1g0180 Chr1 1646113 1648239 -