Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi1g0181 . . . . . . . . . . . . . . . . . . . . . . . . . . . Bva11g00852 Car02g01141 . . . . . . . . . . . . . . . . . . . Lal6g0738 . . . . . Lan11g0750 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0182 . . . . . . . . . . . . . . . . . . . Apr3g1565 . . . . . . . . Car06g01805 . . . . . . . . . . . . Gma01g00934 . . . . . . . . . . . Lal15g0750 . . . . . . Lapu3g02334 . Lasa7g02920 . . . . . . . . . . Lja4g3560 . . Mepo2g03010 . Mesa13g02048 . . . . . Phac2g01537 . Phco4g01858 . . . . Psa7g4089 Pste3g04078 . . . . . . . Pvu2g1010 . . . . . . . . . . . . . Trre7g01954 . . . . . . . Vimu11g02202 . . . Vivi5g03778 . . .
Vvi1g0183 . . . . . . . . . . . . . . . . . . . Apr3g1567 . . . . . . . . Car06g01803 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lapu3g02337 . Lasa7g02923 . . . . . . . . . . Lja4g3562 . . Mepo2g03012 . Mesa13g02046 . . . . . Phac2g01535 . Phco4g01856 . . . . Psa7g3001 Pste3g04080 . . . . . . . Pvu2g1008 . . . . . Spst3g02294 . . . . . . . Trre7g01952 . . . . . . . Vimu11g02199 . . . Vivi5g03781 . . .
Vvi1g0184 . . . . . . . . . . . . . . . . . . . . . . . . . . Bva01g01830 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Pste1g02730 . . . . . . . Pvu3g0358 . . . Seca10g02070 . . . . Sto11g0789 Sto6g2867 . . . . . . . . . . . Vimu7g04139 . Viun2g00697 . Vivi1g03553 . .
Vvi1g0185 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0186 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0187 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0188 . . . . . . . . . . . . . . . . . . Apr7g1312 Apr3g1569 . . . . . . . Bva11g00088 Car06g01801 . Cca06g00456 . . . . . . . . . . . . . . . . . . . . . Lal16g0776 Lal15g0748 . . . . . . . . . . . . . . . . . . . Lja4g3565 . . . . . . . . . . . . . . . . . Psa7g2995 . . . . . . . . . . . . . . . . Ssu2g1367 . . . . . . . . . . . . . . . . . . . . .
Vvi1g0189 . . . . . Adu10g02202 . . . . . . . . . . . . . . . Arst10g02827 . . . . Bva08g01657 . Car06g02136 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco7g02404 . . . Psa7g4085 . . . . . . . Pumo10g02237 . Pvu9g2082 . Rops10g00436 . Seca4g03370 . . . . . . . . . . . . . Vian4g00604 . . . Vimu10g00818 . Viun9g00840 . . . .
Vvi1g0190 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi1g0181 Chr1 1651403 1652407 +
Bva Bva11g00852 Chr11 10995696 10998335 -
Car Car02g01141 Chr02 33287495 33288966 -
Lal Lal6g0738 Chr6 4918307 4922606 +
Lan Lan11g0750 Chr11 6774167 6778249 +
Vvi Vvi1g0182 Chr1 1653556 1662964 -
Apr Apr3g1565 Chr3 30702333 30705571 -
Car Car06g01805 Chr06 17890963 17895469 +
Gma Gma01g00934 Chr01 30539495 30539863 -
Lal Lal15g0750 Chr15 5284757 5287870 +
Lapu Lapu3g02334 Chr3 44720332 44725165 -
Lasa Lasa7g02920 Chr7 559240969 559244337 -
Lja Lja4g3560 Chr4 66673763 66677507 -
Mepo Mepo2g03010 Chr2 39813896 39818223 -
Mesa Mesa13g02048 Chr13 24039379 24042710 +
Phac Phac2g01537 Chr2 14572159 14576318 +
Phco Phco4g01858 Chr4 36621445 36624839 +
Psa Psa7g4089 Chr7 335164205 335165522 +
Pste Pste3g04078 Chr3 35696830 35700790 -
Pvu Pvu2g1010 Chr2 18975877 18979811 +
Trre Trre7g01954 Chr7 15423665 15427104 +
Vimu Vimu11g02202 Chr11 38476982 38479893 +
Vivi Vivi5g03778 Chr5 131762130 131765908 -
Vvi Vvi1g0183 Chr1 1665411 1669053 -
Apr Apr3g1567 Chr3 30710955 30715498 -
Car Car06g01803 Chr06 17878151 17882684 +
Lapu Lapu3g02337 Chr3 44743424 44746295 -
Lasa Lasa7g02923 Chr7 559286620 559290529 -
Lja Lja4g3562 Chr4 66724698 66729914 -
Mepo Mepo2g03012 Chr2 39829879 39835312 -
Mesa Mesa13g02046 Chr13 24019343 24023832 +
Phac Phac2g01535 Chr2 14543161 14547465 +
Phco Phco4g01856 Chr4 36529437 36533051 +
Psa Psa7g3001 Chr7 218364000 218368913 +
Pste Pste3g04080 Chr3 35711780 35713835 -
Pvu Pvu2g1008 Chr2 18943568 18947419 +
Spst Spst3g02294 Chr3 66174612 66178145 +
Trre Trre7g01952 Chr7 15411164 15415040 +
Vimu Vimu11g02199 Chr11 38435862 38439362 +
Vivi Vivi5g03781 Chr5 131779419 131785230 -
Vvi Vvi1g0184 Chr1 1683662 1690883 +
Bva Bva01g01830 Chr01 18881550 18888786 -
Pste Pste1g02730 Chr1 11118067 11120038 +
Pvu Pvu3g0358 Chr3 3439690 3441988 -
Seca Seca10g02070 Chr10 23657344 23657655 -
Sto Sto11g0789 Chr11 8767100 8768239 -
Sto Sto6g2867 Chr6 35893249 35898509 -
Vimu Vimu7g04139 Chr7 40040457 40045467 +
Viun Viun2g00697 Chr2 16586226 16598577 -
Vivi Vivi1g03553 Chr1 76064292 76065594 -
Vvi Vvi1g0185 Chr1 1692029 1696196 +
Vvi Vvi1g0186 Chr1 1696394 1697455 +
Vvi Vvi1g0187 Chr1 1700112 1700771 +
Vvi Vvi1g0188 Chr1 1705073 1708350 +
Apr Apr7g1312 Chr7 20199772 20212575 -
Apr Apr3g1569 Chr3 30735449 30739095 +
Bva Bva11g00088 Chr11 3032218 3034461 -
Car Car06g01801 Chr06 17863386 17866770 -
Cca Cca06g00456 Chr06 14002694 14005402 +
Lal Lal16g0776 Chr16 5017221 5024719 -
Lal Lal15g0748 Chr15 5270723 5274450 -
Lja Lja4g3565 Chr4 66746125 66748994 -
Psa Psa7g2995 Chr7 218014306 218016473 -
Ssu Ssu2g1367 Chr2 57591048 57592226 -
Vvi Vvi1g0189 Chr1 1710146 1715609 -
Adu Adu10g02202 Chr10 95531258 95532964 +
Arst Arst10g02827 Chr10 94815541 94817541 +
Bva Bva08g01657 Chr08 8944346 8952696 -
Car Car06g02136 Chr06 21776419 21783893 -
Phco Phco7g02404 Chr7 41958600 41960501 -
Psa Psa7g4085 Chr7 335035600 335040585 +
Pumo Pumo10g02237 Chr10 31103165 31106081 -
Pvu Pvu9g2082 Chr9 29868278 29870179 -
Rops Rops10g00436 Chr10 11926710 11929573 +
Seca Seca4g03370 Chr4 58328668 58330584 -
Vian Vian4g00604 Chr4 7306557 7308470 +
Vimu Vimu10g00818 Chr10 7242151 7244064 +
Viun Viun9g00840 Chr9 6309398 6312439 +
Vvi Vvi1g0190 Chr1 1716350 1722746 +
Car Car02g01141 Chr02 33287495 33288966 -