Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi1g0161 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0162 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0163 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0164 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lapu9g00487 . . . . . . . . . . . . . . . Mepo6g01650 . Mesa5g02936 . . . . . . . Phco7g02799 . . . . . Pste2g03366 . . . . . Pumo2g01568 . Pvu9g2461 . Rops11g01708 . Seca6g03846 . Spst9g02948 . . . . . . . Trre3g02193 . . . Vian4g00248 . . . Vimu10g00337 . Viun9g00322 . . . .
Vvi1g0165 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0166 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0167 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0168 . . . . . . . . . . . . . . . . . . . Apr3g1559 . . . . . . . . Car06g01811 . . . . . . . . . . . . . . . . . . . . . . . . Lal15g0754 . . . . . . Lapu3g02327 . Lasa7g02912 . . . . . . . . . . Lja4g3551 . . Mepo2g03003 . Mesa13g02054 . . . . . . . Phco4g01867 . . . . Psa7g3014 Pste3g04065 . . . . . . . Pvu2g1018 . . . . . Spst3g02304 . . . . . . . Trre7g01961 . . . . . . . Vimu11g02212 . . . Vivi5g03767 . . .
Vvi1g0169 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0170 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi1g0161 Chr1 1547328 1548437 +
Vvi Vvi1g0162 Chr1 1550844 1552963 +
Vvi Vvi1g0163 Chr1 1552992 1554758 +
Vvi Vvi1g0164 Chr1 1558076 1559052 +
Lapu Lapu9g00487 Chr9 5419528 5437590 -
Mepo Mepo6g01650 Chr6 18265907 18289496 +
Mesa Mesa5g02936 Chr5 53477898 53496192 -
Phco Phco7g02799 Chr7 47043807 47066403 -
Pste Pste2g03366 Chr2 33735837 33751588 +
Pumo Pumo2g01568 Chr2 29359081 29373584 +
Pvu Pvu9g2461 Chr9 35059145 35078710 -
Rops Rops11g01708 Chr11 26702875 26726274 +
Seca Seca6g03846 Chr6 105998416 106017254 -
Spst Spst9g02948 Chr9 63597921 63612776 -
Trre Trre3g02193 Chr3 19699001 19712483 +
Vian Vian4g00248 Chr4 2615426 2633614 +
Vimu Vimu10g00337 Chr10 2312355 2328939 +
Viun Viun9g00322 Chr9 2155493 2167798 +
Vvi Vvi1g0165 Chr1 1559961 1561101 +
Vvi Vvi1g0166 Chr1 1562741 1563203 -
Vvi Vvi1g0167 Chr1 1563622 1564509 +
Vvi Vvi1g0168 Chr1 1569135 1570145 +
Apr Apr3g1559 Chr3 30575448 30578421 +
Car Car06g01811 Chr06 17966426 17967997 -
Lal Lal15g0754 Chr15 5326113 5328161 -
Lapu Lapu3g02327 Chr3 44606783 44608629 +
Lasa Lasa7g02912 Chr7 558293449 558294483 +
Lja Lja4g3551 Chr4 66545302 66546956 +
Mepo Mepo2g03003 Chr2 39735532 39737513 +
Mesa Mesa13g02054 Chr13 24096050 24097371 -
Phco Phco4g01867 Chr4 36966809 36968460 -
Psa Psa7g3014 Chr7 218986547 218987591 +
Pste Pste3g04065 Chr3 35414940 35417132 +
Pvu Pvu2g1018 Chr2 19236679 19238178 -
Spst Spst3g02304 Chr3 66342747 66344034 -
Trre Trre7g01961 Chr7 15488241 15489927 -
Vimu Vimu11g02212 Chr11 38677979 38679343 -
Vivi Vivi5g03767 Chr5 131639696 131640963 +
Vvi Vvi1g0169 Chr1 1572843 1582257 -
Vvi Vvi1g0170 Chr1 1582965 1584185 +
Lapu Lapu9g00487 Chr9 5419528 5437590 -
Mepo Mepo6g01650 Chr6 18265907 18289496 +
Mesa Mesa5g02936 Chr5 53477898 53496192 -
Phco Phco7g02799 Chr7 47043807 47066403 -
Pste Pste2g03366 Chr2 33735837 33751588 +
Pumo Pumo2g01568 Chr2 29359081 29373584 +
Pvu Pvu9g2461 Chr9 35059145 35078710 -
Rops Rops11g01708 Chr11 26702875 26726274 +
Seca Seca6g03846 Chr6 105998416 106017254 -
Spst Spst9g02948 Chr9 63597921 63612776 -
Trre Trre3g02193 Chr3 19699001 19712483 +
Vian Vian4g00248 Chr4 2615426 2633614 +
Vimu Vimu10g00337 Chr10 2312355 2328939 +
Viun Viun9g00322 Chr9 2155493 2167798 +