Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu11g2118 . . Adu10g02841 Aed4g1477 Aev08g1421 Ahy20g3139 Ahy10g2579 Aip10g03547 . . . Apr5g0912 . Bach9g01282 . Bva07g01127 Car07g02517 Cca04g01829 . Dod09g0705 . . Gma13g01702 Gma15g02241 Gso15g1945 Gso11g2255 Lal1g0650 Lal2g0708 Lal9g0619 Lan7g0703 . Lan13g0651 . Lasa4g01212 . . . . Lja3g2497 Mal5g1800 Mepo1g03427 Mesa29g03924 . Mtr8g1245 Phac11g02646 Phco9g02152 . Psa4g3373 . Pumo10g02842 . Seca4g07452 Spst11g00079 Ssu2g0261 . Tpr7g1602 Trre15g01488 Tsu08g01415 Vian5g00146 Vifa4g00791 Vimu5g00242 Viun11g00185 Vivi7g04806 .
Pvu11g2119 . . . Aed4g1480 . . . . . . . Apr5g0917 . . . . Car07g02519 Cca04g01831 . . . . Gma13g01705 . Gso15g1947 Gso11g2257 . . Lal9g0617 . . . . Lasa4g01210 . . . . . Mal5g1799 Mepo1g03429 Mesa29g03926 . Mtr8g1243 . Phco9g02155 . . Pste1g04388 Pumo10g02844 Rops3g02624 Seca4g09804 Spst11g00083 Ssu2g0258 . Tpr7g1605 Trre15g01486 Tsu08g01411 . Vifa4g00794 Vimu5g00238 Viun11g00182 Vivi7g04802 .
Pvu11g2120 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lasa4g02716 . . . . . . . . . . . . . . . . . . Spst11g00382 . . . . . . . Vimu5g00237 . . .
Pvu11g2121 . . . . . . . . . . . . . . . . . . . . . . . . . Gso11g2260 . . . . . . . Lasa7g00674 . . . . . . . . . . . Phco9g02156 . . . . . . Spst11g00383 . . . . . . . Vimu5g00234 . . .
Pvu11g2122 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lasa7g00672 . . . . . . . . . . . . . . . . . . Spst11g00384 . . . . . . . Vimu5g00233 . . .
Pvu11g2123 . . . . . . . . . . . . . . . . . . . . . . . . . Gso11g2261 . . . . . . . Lasa4g02713 . . . . . . . . . . . Phco9g02157 . . . . . . Spst11g00385 . . . . . . . Vimu5g00232 . . .
Pvu11g2124 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Vimu5g00231 . . .
Pvu11g2125 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco9g02158 . . Pste1g00079 . . . Spst11g00386 . . . . . . . Vimu5g00229 . . .
Pvu11g2126 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Spst11g00388 . . . . . . . Vimu5g00227 . . .
Pvu11g2127 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco9g02159 . . . . . . . . . . . . . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Pvu Pvu11g2118 Chr11 48166330 48175959 -
Adu Adu10g02841 Chr10 104946909 104951630 -
Aed Aed4g1477 Chr4 19451401 19459637 -
Aev Aev08g1421 Chr08 9732356 9742278 +
Ahy Ahy20g3139 Chr20 142036658 142042616 -
Ahy Ahy10g2579 Chr10 115248801 115254796 -
Aip Aip10g03547 Chr10 133869644 133875122 -
Apr Apr5g0912 Chr5 13439008 13449067 -
Bach Bach9g01282 Chr9 10214669 10222097 +
Bva Bva07g01127 Chr07 12603820 12610659 -
Car Car07g02517 Chr07 47599479 47606474 -
Cca Cca04g01829 Chr04 34073623 34097374 -
Dod Dod09g0705 Chr09 15286034 15305360 -
Gma Gma13g01702 Chr13 32031803 32044213 -
Gma Gma15g02241 Chr15 46994339 47001921 -
Gso Gso15g1945 Chr15 43564390 43573236 -
Gso Gso11g2255 Chr11 38322125 38335674 -
Lal Lal1g0650 Chr1 4234135 4240256 +
Lal Lal2g0708 Chr2 4358200 4364869 +
Lal Lal9g0619 Chr9 4214444 4220967 +
Lan Lan7g0703 Chr7 5883400 5890598 +
Lan Lan13g0651 Chr13 5520916 5529190 +
Lasa Lasa4g01212 Chr4 97681475 97685721 +
Lja Lja3g2497 Chr3 31712255 31721100 +
Mal Mal5g1800 Chr5 36855736 36861917 +
Mepo Mepo1g03427 Chr1 39737073 39744190 -
Mesa Mesa29g03924 Chr29 63976700 63983202 -
Mtr Mtr8g1245 Chr8 15299564 15306896 +
Phac Phac11g02646 Chr11 37152848 37160033 -
Phco Phco9g02152 Chr9 46899868 46910045 -
Psa Psa4g3373 Chr4 286798434 286803773 -
Pumo Pumo10g02842 Chr10 56666017 56675099 -
Seca Seca4g07452 Chr4 167761579 167773348 +
Spst Spst11g00079 Chr11 1365942 1379378 -
Ssu Ssu2g0261 Chr2 15306633 15324529 +
Tpr Tpr7g1602 Chr7 18212702 18219891 -
Trre Trre15g01488 Chr15 11694070 11700581 +
Tsu Tsu08g01415 Chr08 16443895 16449597 +
Vian Vian5g00146 Chr5 2728077 2737692 +
Vifa Vifa4g00791 Chr4 233197257 233201686 -
Vimu Vimu5g00242 Chr5 2308114 2317764 +
Viun Viun11g00185 Chr11 1503311 1514758 +
Vivi Vivi7g04806 Chr7 123806283 123811816 +
Pvu Pvu11g2119 Chr11 48210980 48215060 +
Aed Aed4g1480 Chr4 19500390 19500945 -
Apr Apr5g0917 Chr5 13504794 13516018 -
Car Car07g02519 Chr07 47694176 47696139 +
Cca Cca04g01831 Chr04 34133690 34137469 +
Gma Gma13g01705 Chr13 32071220 32074461 +
Gso Gso15g1947 Chr15 43626360 43628860 +
Gso Gso11g2257 Chr11 38360927 38364337 +
Lal Lal9g0617 Chr9 4203953 4208857 -
Lasa Lasa4g01210 Chr4 97047637 97049571 -
Mal Mal5g1799 Chr5 36687426 36690801 -
Mepo Mepo1g03429 Chr1 39789293 39792763 +
Mesa Mesa29g03926 Chr29 64003400 64007281 +
Mtr Mtr8g1243 Chr8 15277030 15280174 -
Phco Phco9g02155 Chr9 46953949 46957406 +
Pste Pste1g04388 Chr1 30210645 30216192 +
Pumo Pumo10g02844 Chr10 56715024 56718590 +
Rops Rops3g02624 Chr3 55484872 55485458 +
Seca Seca4g09804 Chr4 230077793 230080728 +
Spst Spst11g00083 Chr11 1415919 1419915 +
Ssu Ssu2g0258 Chr2 15182783 15185842 -
Tpr Tpr7g1605 Chr7 18263840 18266606 +
Trre Trre15g01486 Chr15 11682702 11684696 -
Tsu Tsu08g01411 Chr08 16413708 16418497 -
Vifa Vifa4g00794 Chr4 234470083 234471734 +
Vimu Vimu5g00238 Chr5 2253657 2257731 -
Viun Viun11g00182 Chr11 1476456 1480849 -
Vivi Vivi7g04802 Chr7 123728317 123731396 -
Pvu Pvu11g2120 Chr11 48221652 48222351 -
Lasa Lasa4g02716 Chr4 516549157 516549795 -
Spst Spst11g00382 Chr11 22750968 22751466 -
Vimu Vimu5g00237 Chr5 2229354 2230259 -
Pvu Pvu11g2121 Chr11 48302917 48303563 -
Gso Gso11g2260 Chr11 38382291 38383305 +
Lasa Lasa7g00674 Chr7 37133846 37134415 +
Phco Phco9g02156 Chr9 46964453 46964940 +
Spst Spst11g00383 Chr11 22808331 22808824 +
Vimu Vimu5g00234 Chr5 2191596 2192477 -
Pvu Pvu11g2122 Chr11 48316398 48317068 +
Lasa Lasa7g00672 Chr7 36780293 36780862 -
Spst Spst11g00384 Chr11 22927751 22928246 -
Vimu Vimu5g00233 Chr5 2186953 2187453 -
Pvu Pvu11g2123 Chr11 48318478 48318960 +
Gso Gso11g2261 Chr11 38389190 38390248 +
Lasa Lasa4g02713 Chr4 516463811 516464431 -
Phco Phco9g02157 Chr9 46974204 46974691 -
Spst Spst11g00385 Chr11 22964471 22964964 -
Vimu Vimu5g00232 Chr5 2173691 2175328 -
Pvu Pvu11g2124 Chr11 48322476 48323071 +
Vimu Vimu5g00231 Chr5 2168290 2169307 -
Pvu Pvu11g2125 Chr11 48345154 48345834 -
Phco Phco9g02158 Chr9 46982611 46983098 +
Pste Pste1g00079 Chr1 331805 340894 +
Spst Spst11g00386 Chr11 23008069 23008562 +
Vimu Vimu5g00229 Chr5 2129849 2130169 -
Pvu Pvu11g2126 Chr11 48353001 48353604 -
Spst Spst11g00388 Chr11 23125486 23125981 -
Vimu Vimu5g00227 Chr5 2120510 2120994 -
Pvu Pvu11g2127 Chr11 48357676 48358386 -
Phco Phco9g02159 Chr9 46990812 46991299 +