Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu11g2128 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g2129 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco9g02160 . . . . . . . . . . . . . . . . . .
Pvu11g2130 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lasa7g00670 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g2131 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco9g02161 . . . . . . . . . . . . . . . . . .
Pvu11g2132 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g2133 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco9g02163 . . . . . . . . . . . . . . . . . .
Pvu11g2134 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g2135 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g2136 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Spst11g00403 . . . . . . . . . . .
Pvu11g2137 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lasa7g00669 . . . . . . . . . . . . . . . . . . Spst11g00404 . . . . . . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Pvu Pvu11g2128 Chr11 48372017 48372723 -
Pvu Pvu11g2129 Chr11 48380000 48380486 -
Phco Phco9g02160 Chr9 46997380 46997652 -
Pvu Pvu11g2130 Chr11 48403899 48404588 -
Lasa Lasa7g00670 Chr7 36606800 36607400 +
Pvu Pvu11g2131 Chr11 48418111 48418810 +
Phco Phco9g02161 Chr9 47003099 47005125 +
Pvu Pvu11g2132 Chr11 48421130 48421769 +
Pvu Pvu11g2133 Chr11 48427784 48428112 +
Phco Phco9g02163 Chr9 47015293 47015616 +
Pvu Pvu11g2134 Chr11 48439381 48439996 +
Pvu Pvu11g2135 Chr11 48442632 48443381 +
Pvu Pvu11g2136 Chr11 48452490 48453145 +
Spst Spst11g00403 Chr11 24364208 24373623 -
Pvu Pvu11g2137 Chr11 48461989 48462828 +
Lasa Lasa7g00669 Chr7 36400554 36401124 +
Spst Spst11g00404 Chr11 24437833 24438293 +