Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
Valid last name is required.
    
Valid last name is required.
    
Valid line number is required.
Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu11g2108 . . Adu10g02648 . . . . . . . . . . . . . . Cca04g01822 . . . . . . Gso15g1935 Gso11g2252 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g2109 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g2110 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g2111 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g2112 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g2113 . . Adu10g02646 . . Ahy20g2930 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g2114 . . . . . . . . . . . . . . . . . . . . . . . . Gso15g1941 . . . . . . . . . . . . . . . . . . . . . . . Pste1g00376 . . . . . . . . . . . . . . .
Pvu11g2115 . . . . . . . . . . . . . . . . . . . . . . . . Gso15g1942 . . . . . . . . . . . . . . . . . . . . . . . . . . . Spst11g00074 . . . . . . . . . . .
Pvu11g2116 . . . . Aev08g1424 . . . . . . Apr5g0910 . Bach9g01283 . Bva07g01125 Car07g02515 Cca04g01824 . Dod09g0703 . . . Gma15g02238 . Gso11g2253 . Lal2g0710 . Lan7g0705 . . . Lasa4g01214 . . . . Lja3g2500 Mal5g1807 . Mesa29g03920 . Mtr8g1249 . Phco9g02150 . . . Pumo10g02840 Rops3g02609 Seca4g09797 Spst11g00077 Ssu2g0022 . Tpr7g1599 Trre15g01491 Tsu08g01423 Vian5g00148 Vifa4g00789 Vimu5g00245 Viun11g00197 Vivi7g04813 .
Pvu11g2117 Acco08g1904 . . Aed4g1476 Aev08g1422 . . . Alju10g1883 . . Apr5g0911 . . Bisa02g2533 Bva07g01126 Car07g02516 Cca04g01825 Dere07g1826 Dod09g0704 Enph8g1416 Glsi04g1832 Gma13g01701 Gma15g02239 Gso15g1944 Gso11g2254 . Lal2g0709 Lal9g0620 Lan7g0704 . . . Lasa4g01213 Lele29g1293 Lele30g0245 Lele31g0283 Lele32g1140 Lja3g2498 Mal5g1804 Mepo1g03425 Mesa29g03922 Mibi07g1775 Mtr8g1248 . Phco9g02151 . . . Pumo10g02841 . Seca4g09798 Spst11g00078 Ssu2g0262 Sto4g2337 Tpr7g1601 Trre15g01490 Tsu08g01422 Vian5g00147 Vifa4g00790 Vimu5g00243 Viun11g00196 Vivi7g04812 .
   
Previous Page 2786 of 2800 Next

DecoBrowse

Select Species Gene Chromosome Start End Strand
Spst Spst11g00077 Chr11 1356250 1362156 +
Spst Spst11g00074 Chr11 1333085 1333837 +
Pste Pste1g00376 Chr1 1311590 1312372 -
Dod Dod09g0704 Chr09 15275699 15280124 +
Pvu Pvu11g2108 Chr11 48061572 48067153 +
Adu Adu10g02648 Chr10 103162881 103165073 +
Cca Cca04g01822 Chr04 33910715 33912165 -
Gso Gso15g1935 Chr15 43196916 43209983 +
Gso Gso11g2252 Chr11 38305938 38308400 -
Pvu Pvu11g2109 Chr11 48078224 48082408 -
Pvu Pvu11g2110 Chr11 48101703 48106204 +
Pvu Pvu11g2111 Chr11 48104896 48106774 -
Pvu Pvu11g2112 Chr11 48106871 48107629 -
Pvu Pvu11g2113 Chr11 48110125 48114606 +
Adu Adu10g02646 Chr10 103138127 103142330 +
Ahy Ahy20g2930 Chr20 140078222 140083063 +
Pvu Pvu11g2114 Chr11 48147647 48151255 +
Gso Gso15g1941 Chr15 43399971 43403953 +
Pste Pste1g00376 Chr1 1311590 1312372 -
Pvu Pvu11g2115 Chr11 48152413 48155957 +
Gso Gso15g1942 Chr15 43457036 43460997 +
Spst Spst11g00074 Chr11 1333085 1333837 +
Pvu Pvu11g2116 Chr11 48157669 48161754 +
Aev Aev08g1424 Chr08 9789925 9802264 -
Apr Apr5g0910 Chr5 13415446 13425920 +
Bach Bach9g01283 Chr9 10223938 10228607 -
Bva Bva07g01125 Chr07 12596992 12601133 +
Car Car07g02515 Chr07 47586127 47591155 +
Cca Cca04g01824 Chr04 33933626 33937989 +
Dod Dod09g0703 Chr09 15206745 15219317 +
Gma Gma15g02238 Chr15 46956786 46965477 +
Gso Gso11g2253 Chr11 38310636 38315991 +
Lal Lal2g0710 Chr2 4369400 4372315 -
Lan Lan7g0705 Chr7 5895839 5898718 -
Lasa Lasa4g01214 Chr4 97752988 97759927 -
Lja Lja3g2500 Chr3 31791065 31796017 -
Mal Mal5g1807 Chr5 36970849 36977276 +
Mesa Mesa29g03920 Chr29 63952742 63958699 +
Mtr Mtr8g1249 Chr8 15327239 15332520 -
Phco Phco9g02150 Chr9 46885593 46894551 +
Pumo Pumo10g02840 Chr10 56640195 56647197 +
Rops Rops3g02609 Chr3 55021236 55028068 +
Seca Seca4g09797 Chr4 230005983 230010800 +
Spst Spst11g00077 Chr11 1356250 1362156 +
Ssu Ssu2g0022 Chr2 1614728 1620347 +
Tpr Tpr7g1599 Chr7 18184215 18190875 +
Trre Trre15g01491 Chr15 11710058 11714702 -
Tsu Tsu08g01423 Chr08 16516840 16523381 -
Vian Vian5g00148 Chr5 2750092 2754021 -
Vifa Vifa4g00789 Chr4 233154198 233158993 -
Vimu Vimu5g00245 Chr5 2323911 2328284 -
Viun Viun11g00197 Chr11 1525408 1530438 -
Vivi Vivi7g04813 Chr7 123856050 123859124 -
Pvu Pvu11g2117 Chr11 48162533 48165032 +
Acco Acco08g1904 Chr08 32375516 32378933 -
Aed Aed4g1476 Chr4 19447704 19450395 +
Aev Aev08g1422 Chr08 9777350 9780831 -
Alju Alju10g1883 Chr10 36641230 36644535 -
Apr Apr5g0911 Chr5 13429796 13432765 +
Bisa Bisa02g2533 Chr02 63881376 63884464 -
Bva Bva07g01126 Chr07 12601616 12603321 +
Car Car07g02516 Chr07 47592661 47596436 +
Cca Cca04g01825 Chr04 33946691 33949433 +
Dere Dere07g1826 Chr07 29580017 29585764 -
Dod Dod09g0704 Chr09 15275699 15280124 +
Enph Enph8g1416 Chr8 23523502 23526749 +
Glsi Glsi04g1832 Chr04 67083276 67091920 -
Gma Gma13g01701 Chr13 32018448 32028793 +
Gma Gma15g02239 Chr15 46968250 46971182 +
Gso Gso15g1944 Chr15 43536940 43540031 +
Gso Gso11g2254 Chr11 38317194 38319813 +
Lal Lal2g0709 Chr2 4366088 4368669 -
Lal Lal9g0620 Chr9 4221558 4224061 -
Lan Lan7g0704 Chr7 5891654 5894251 -
Lasa Lasa4g01213 Chr4 97688465 97693386 -
Lele Lele29g1293 Chr29 19473218 19481769 -
Lele Lele30g0245 Chr30 3062410 3065460 +
Lele Lele31g0283 Chr31 3058885 3062379 +
Lele Lele32g1140 Chr32 11452535 11455591 -
Lja Lja3g2498 Chr3 31722879 31726242 -
Mal Mal5g1804 Chr5 36890427 36894229 -
Mepo Mepo1g03425 Chr1 39729766 39733798 +
Mesa Mesa29g03922 Chr29 63969837 63973228 +
Mibi Mibi07g1775 Chr07 36817664 36821271 -
Mtr Mtr8g1248 Chr8 15313838 15317917 -
Phco Phco9g02151 Chr9 46895978 46897950 +
Pumo Pumo10g02841 Chr10 56648977 56651378 +
Seca Seca4g09798 Chr4 230012405 230015121 +
Spst Spst11g00078 Chr11 1362186 1363986 +
Ssu Ssu2g0262 Chr2 15333791 15336692 -
Sto Sto4g2337 Chr4 24780314 24783936 +
Tpr Tpr7g1601 Chr7 18192699 18196929 +
Trre Trre15g01490 Chr15 11702432 11705723 -
Tsu Tsu08g01422 Chr08 16501749 16505665 -
Vian Vian5g00147 Chr5 2744997 2747112 -
Vifa Vifa4g00790 Chr4 233189962 233192794 +
Vimu Vimu5g00243 Chr5 2319479 2321797 -
Viun Viun11g00196 Chr11 1521790 1524347 -
Vivi Vivi7g04812 Chr7 123815233 123819899 -