Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu11g2098 . . . Aed4g1473 . . . . . . . . . Bach9g01287 . Bva07g01119 Car07g02513 . . Dod09g0694 . . . Gma15g02222 Gso15g1933 . . . Lal9g0622 . . . . . . . . . . . . . . . . . . . . . . . Spst11g00068 . . . . . . . . . Vivi7g04826 .
Pvu11g2099 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lal9g0622 Lan7g0708 . . . . . . . . . . . . . . Phac11g02621 Phco9g02136 . Psa4g3368 . . . . . Ssu2g0268 . . . . . . . . Vivi7g04825 .
Pvu11g2100 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g2101 . . . . . . . . . . . Apr5g0909 . . . . . Cca04g01812 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Pumo10g02839 . . . . . . . . Vian5g00570 . . . . .
Pvu11g2102 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g2103 . . Adu10g02838 . . . Ahy3g0858 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g2104 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g2105 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Pste1g00119 . . . . . . . . . . . . . . .
Pvu11g2106 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g2107 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Vian Vian5g00570 Chr5 20442382 20445387 -
Pste Pste1g00119 Chr1 461032 461538 -
Pvu Pvu11g2098 Chr11 47979557 47980896 +
Aed Aed4g1473 Chr4 19352230 19359132 -
Bach Bach9g01287 Chr9 10261860 10266167 +
Bva Bva07g01119 Chr07 12559000 12563675 -
Car Car07g02513 Chr07 47468968 47483564 -
Dod Dod09g0694 Chr09 14661565 14666691 -
Gma Gma15g02222 Chr15 46193046 46200137 -
Gso Gso15g1933 Chr15 43149251 43156785 -
Lal Lal9g0622 Chr9 4244472 4249091 +
Spst Spst11g00068 Chr11 1270851 1276166 -
Vivi Vivi7g04826 Chr7 124218638 124225968 -
Pvu Pvu11g2099 Chr11 47981161 47984296 +
Lal Lal9g0622 Chr9 4244472 4249091 +
Lan Lan7g0708 Chr7 5942103 5947524 +
Phac Phac11g02621 Chr11 36975460 36983240 +
Phco Phco9g02136 Chr9 46633016 46639935 -
Psa Psa4g3368 Chr4 286227277 286236189 -
Ssu Ssu2g0268 Chr2 16180091 16186606 -
Vivi Vivi7g04825 Chr7 124218638 124226033 -
Pvu Pvu11g2100 Chr11 47990495 47996233 +
Pvu Pvu11g2101 Chr11 47999023 48003072 +
Apr Apr5g0909 Chr5 13406523 13411470 +
Cca Cca04g01812 Chr04 33651390 33664175 +
Pumo Pumo10g02839 Chr10 56624590 56629913 +
Vian Vian5g00570 Chr5 20442382 20445387 -
Pvu Pvu11g2102 Chr11 48005884 48006489 +
Pvu Pvu11g2103 Chr11 48008089 48010088 +
Adu Adu10g02838 Chr10 104932441 104934996 +
Ahy Ahy3g0858 Chr3 9700176 9703082 +
Pvu Pvu11g2104 Chr11 48012047 48018560 +
Pvu Pvu11g2105 Chr11 48020821 48024927 +
Pste Pste1g00119 Chr1 461032 461538 -
Pvu Pvu11g2106 Chr11 48034211 48038514 +
Pvu Pvu11g2107 Chr11 48056178 48059840 +