Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu11g2088 . . . . . . . . . . . . . . . . . . . . . . . . . Gso11g2245 . . . . . . . . . . . . . . . . . Mtr8g1259 . . . . . . . . Spst11g00372 . . . . . . . . . . .
Pvu11g2089 . . . . . . . . . . . . . . . . . . . . . . . . . Gso11g2246 . . . . . . . . . . . . . . Mepo1g03409 Mesa29g03900 . Mtr8g1258 . . . . . . . . Spst11g00373 . . . . . . . . . . .
Pvu11g2090 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco9g02134 . . . . . . Spst11g00067 . . . . . . . . . . .
Pvu11g2091 . . . . . . Ahy3g0866 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g2092 . . . . . Ahy20g2974 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g2093 . . Adu10g02688 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g2094 . . Adu10g02686 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g2095 . . . Aed4g1472 Aev08g1428 . . . . . . Apr5g0904 . Bach9g01288 . Bva07g01118 Car07g02512 Cca04g01805 . Dod09g0693 . . Gma13g01695 Gma15g02221 Gso15g1932 . . Lal2g0714 Lal9g0623 Lan7g0709 . . . Lasa4g01221 . . . . Lja3g2504 Mal5g1814 . . . . Phac11g02618 . . Psa4g3365 Pste1g00182 Pumo10g02834 Rops3g02590 Seca4g09791 . Ssu2g0277 . Tpr7g1592 . Tsu08g01436 . Vifa4g00782 . . . .
Pvu11g2096 . . . . . . . . . . . Apr5g0906 . . . . . Cca04g01809 . . . . Gma13g01697 . . . Lal1g0652 Lal2g0712 . Lan7g0707 . . . . . . . . Lja3g2502 Mal5g1812 . . . . . . . . Pste1g00145 Pumo10g02836 Rops3g02606 Seca4g09793 . . . Tpr7g1594 . Tsu08g01434 . . Vimu5g00272 . . .
Pvu11g2097 . . . . Aev08g1426 . . . . . . Apr5g0908 . . . . . Cca04g01811 . . . . Gma13g01699 . . . Lal1g0651 Lal2g0711 Lal9g0621 Lan7g0706 Lan8g1322 Lan13g0652 . Lasa4g01219 . . . . Lja3g2501 Mal5g1808 Mepo1g03422 Mesa29g03919 . Mtr8g1250 . . . . Pste1g00123 Pumo10g02838 Rops3g02607 Seca4g09794 . Ssu2g0271 . Tpr7g1598 Trre15g01492 Tsu08g01424 Vian5g00161 Vifa4g00787 . Viun11g00216 Vivi7g04827 .
   
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Select Species Gene Chromosome Start End Strand
Adu Adu10g02686 Chr10 103520538 103524405 +
Pvu Pvu11g2088 Chr11 47817166 47818195 -
Gso Gso11g2245 Chr11 38238668 38239927 -
Mtr Mtr8g1259 Chr8 15450177 15451558 +
Spst Spst11g00372 Chr11 20802511 20803491 -
Pvu Pvu11g2089 Chr11 47821279 47822325 -
Gso Gso11g2246 Chr11 38248447 38249834 +
Mepo Mepo1g03409 Chr1 39490799 39492129 -
Mesa Mesa29g03900 Chr29 63458848 63459306 -
Mtr Mtr8g1258 Chr8 15440208 15442244 +
Spst Spst11g00373 Chr11 20834523 20834891 -
Pvu Pvu11g2090 Chr11 47836160 47838884 -
Phco Phco9g02134 Chr9 46617838 46621671 -
Spst Spst11g00067 Chr11 1256390 1267548 -
Pvu Pvu11g2091 Chr11 47839411 47843851 -
Ahy Ahy3g0866 Chr3 9798826 9802965 -
Pvu Pvu11g2092 Chr11 47907355 47911290 -
Ahy Ahy20g2974 Chr20 140509437 140517093 +
Pvu Pvu11g2093 Chr11 47916839 47920338 -
Adu Adu10g02688 Chr10 103530482 103537057 -
Pvu Pvu11g2094 Chr11 47922232 47926112 -
Adu Adu10g02686 Chr10 103520538 103524405 +
Pvu Pvu11g2095 Chr11 47930032 47938059 +
Aed Aed4g1472 Chr4 19342342 19351656 +
Aev Aev08g1428 Chr08 9872253 9880985 -
Apr Apr5g0904 Chr5 13335088 13342911 +
Bach Bach9g01288 Chr9 10268224 10275966 -
Bva Bva07g01118 Chr07 12548991 12558738 +
Car Car07g02512 Chr07 47458644 47465601 +
Cca Cca04g01805 Chr04 33433787 33442270 +
Dod Dod09g0693 Chr09 14367427 14375945 +
Gma Gma13g01695 Chr13 31915349 31923517 -
Gma Gma15g02221 Chr15 46164787 46172397 +
Gso Gso15g1932 Chr15 43120796 43128670 +
Lal Lal2g0714 Chr2 4414789 4422286 -
Lal Lal9g0623 Chr9 4250400 4258098 -
Lan Lan7g0709 Chr7 5950971 5959147 -
Lasa Lasa4g01221 Chr4 98690779 98695904 -
Lja Lja3g2504 Chr3 31901397 31908734 -
Mal Mal5g1814 Chr5 37163380 37170756 -
Phac Phac11g02618 Chr11 36923512 36931698 +
Psa Psa4g3365 Chr4 286196471 286201830 +
Pste Pste1g00182 Chr1 671798 679968 -
Pumo Pumo10g02834 Chr10 56468485 56471426 +
Rops Rops3g02590 Chr3 54385949 54394760 +
Seca Seca4g09791 Chr4 229885329 229893931 +
Ssu Ssu2g0277 Chr2 17107004 17113647 -
Tpr Tpr7g1592 Chr7 18058150 18065364 +
Tsu Tsu08g01436 Chr08 16707292 16714702 -
Vifa Vifa4g00782 Chr4 231066198 231071382 -
Pvu Pvu11g2096 Chr11 47940955 47958622 +
Apr Apr5g0906 Chr5 13355231 13372392 +
Cca Cca04g01809 Chr04 33525881 33550397 +
Gma Gma13g01697 Chr13 31950709 31969120 +
Lal Lal1g0652 Chr1 4256828 4258429 -
Lal Lal2g0712 Chr2 4388235 4403155 -
Lan Lan7g0707 Chr7 5916313 5932763 -
Lja Lja3g2502 Chr3 31827863 31853914 -
Mal Mal5g1812 Chr5 37085955 37095687 -
Pste Pste1g00145 Chr1 561541 587785 -
Pumo Pumo10g02836 Chr10 56501274 56524775 +
Rops Rops3g02606 Chr3 54938718 54959082 +
Seca Seca4g09793 Chr4 229926305 229953281 +
Tpr Tpr7g1594 Chr7 18104218 18125174 +
Tsu Tsu08g01434 Chr08 16651018 16674921 -
Vimu Vimu5g00272 Chr5 2514152 2536095 +
Pvu Pvu11g2097 Chr11 47960630 47974456 +
Aev Aev08g1426 Chr08 9825676 9850294 -
Apr Apr5g0908 Chr5 13384038 13402099 +
Cca Cca04g01811 Chr04 33609774 33636254 +
Gma Gma13g01699 Chr13 31973393 31989155 +
Lal Lal1g0651 Chr1 4240606 4254361 -
Lal Lal2g0711 Chr2 4373086 4386691 -
Lal Lal9g0621 Chr9 4224844 4239798 -
Lan Lan7g0706 Chr7 5899644 5913943 -
Lan Lan8g1322 Chr8 20057257 20062598 -
Lan Lan13g0652 Chr13 5529926 5543528 -
Lasa Lasa4g01219 Chr4 98148235 98162789 -
Lja Lja3g2501 Chr3 31797246 31814772 -
Mal Mal5g1808 Chr5 36979874 36996858 -
Mepo Mepo1g03422 Chr1 39640746 39656095 +
Mesa Mesa29g03919 Chr29 63936226 63951148 +
Mtr Mtr8g1250 Chr8 15333706 15349598 -
Pste Pste1g00123 Chr1 486306 522673 -
Pumo Pumo10g02838 Chr10 56530915 56549855 +
Rops Rops3g02607 Chr3 54988638 55006593 +
Seca Seca4g09794 Chr4 229966597 229994195 +
Ssu Ssu2g0271 Chr2 16229679 16254461 +
Tpr Tpr7g1598 Chr7 18165123 18182530 +
Trre Trre15g01492 Chr15 11716281 11731509 -
Tsu Tsu08g01424 Chr08 16525824 16541473 -
Vian Vian5g00161 Chr5 3226779 3244685 +
Vifa Vifa4g00787 Chr4 232257905 232261333 +
Viun Viun11g00216 Chr11 1761487 1783261 +
Vivi Vivi7g04827 Chr7 124284765 124299813 +