Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu11g2008 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g2009 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g2010 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g2011 . . . Aed4g1440 . . Ahy10g2549 . . . . Apr5g0882 . . . . . Cca04g01765 . . . . Gma13g01668 . Gso15g1902 Gso11g2222 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g2012 . . . Aed4g1441 . . . . . . . . . . . . . Cca04g01766 . . . . Gma13g01669 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g2013 . . . . . . Ahy10g2550 . Alju10g1743 . . Apr5g0883 . . . . . . . . Enph8g1489 . . . Gso15g1905 Gso11g2223 . . . . . . . . Lele29g1222 Lele30g0287 Lele31g0337 . . . . . . . . . Prci6g2262 . . . . . . Ssu2g0307 Sto4g2413 . . . . . Vimu5g00355 . . .
Pvu11g2014 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g2015 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g2016 . . . . . . . . . . . . . . . . . Cca04g01767 . . . . . . Gso15g1907 . . . . . . . . . . . . . . . . . . . . . . . . . . . . Ssu2g0305 . . . . . . Vimu5g01042 . . .
Pvu11g2017 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Pvu Pvu11g2008 Chr11 46957460 46960984 +
Pvu Pvu11g2009 Chr11 46968564 46969238 +
Pvu Pvu11g2010 Chr11 46969378 46976407 +
Pvu Pvu11g2011 Chr11 46973387 46976295 -
Aed Aed4g1440 Chr4 18914873 18916676 -
Ahy Ahy10g2549 Chr10 114988725 114995216 +
Apr Apr5g0882 Chr5 12971116 12976773 -
Cca Cca04g01765 Chr04 31568899 31572702 +
Gma Gma13g01668 Chr13 31584645 31592963 -
Gso Gso15g1902 Chr15 41841430 41847473 -
Gso Gso11g2222 Chr11 37922018 37926874 -
Pvu Pvu11g2012 Chr11 46981720 46983546 +
Aed Aed4g1441 Chr4 18939025 18944053 -
Cca Cca04g01766 Chr04 31620816 31626349 -
Gma Gma13g01669 Chr13 31595417 31599316 +
Pvu Pvu11g2013 Chr11 46983940 46984209 +
Ahy Ahy10g2550 Chr10 115012032 115021022 +
Alju Alju10g1743 Chr10 30685604 30686594 -
Apr Apr5g0883 Chr5 12981166 12984375 +
Enph Enph8g1489 Chr8 26009945 26010714 -
Gso Gso15g1905 Chr15 41996040 41999718 +
Gso Gso11g2223 Chr11 37929181 37933351 +
Lele Lele29g1222 Chr29 15769132 15774574 +
Lele Lele30g0287 Chr30 6130432 6136780 -
Lele Lele31g0337 Chr31 6975834 6976655 +
Prci Prci6g2262 Chr6 32839436 32847984 +
Ssu Ssu2g0307 Chr2 19064452 19067447 +
Sto Sto4g2413 Chr4 25541329 25541598 -
Vimu Vimu5g00355 Chr5 3188732 3193150 +
Pvu Pvu11g2014 Chr11 46986934 46992112 +
Pvu Pvu11g2015 Chr11 47009677 47013464 +
Pvu Pvu11g2016 Chr11 47021910 47022877 +
Cca Cca04g01767 Chr04 31640389 31645243 -
Gso Gso15g1907 Chr15 42018055 42021579 +
Ssu Ssu2g0305 Chr2 19004690 19022613 +
Vimu Vimu5g01042 Chr5 16922225 16926050 -
Pvu Pvu11g2017 Chr11 47025855 47028845 +