Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu11g2018 . . . . . . Ahy10g2553 . . . . . . . Bisa02g2480 . . Cca04g01720 . . Enph8g1488 . . . . . . . . Lan7g0721 . . . . . . . . . Mal5g1882 . Mesa29g03834 . Mtr8g1307 . . Prci6g2263 . Pste1g00607 Pumo10g02788 . . . Ssu2g0304 Sto4g2412 . . . . . Vimu5g01049 . . .
Pvu11g2019 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Pste1g00292 . . . . . . . . . . . . . . .
Pvu11g2020 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Pste1g00845 . . . . Ssu2g0298 . . . . . . Vimu5g01050 . . .
Pvu11g2021 . . . Aed4g1442 . . . . . . . . . . . . . Cca04g01769 . . . . . . . . . . . . . . . . . . . . . Mal5g1880 . . . Mtr8g1306 . . . . . . . . . Ssu2g0296 . . . . . . . . . .
Pvu11g2022 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Tpr7g1550 . Tsu08g01489 . . . . . .
Pvu11g2023 . . . Aed4g1443 . . Ahy3g0921 . . . . . . . . . . Cca04g01770 . . . . . . . . . . . . . . . . . . . . . . . . . Mtr8g1304 . . . . . Pumo10g02788 . . Spst11g00009 Ssu2g0294 . Tpr7g1551 . . Vian5g00564 . Vimu5g01052 . . .
Pvu11g2024 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mal5g1865 . . . . . . . . . . . . . . . . . Tsu08g01488 . . . . . .
Pvu11g2025 . . . Aed4g1444 . Ahy20g3109 . Aip10g03517 . . . . . . . . Car07g02472 . . . . . . . . . . . . . . . . . . . . . . . . . . Mtr8g1301 . . . . . . . . . . . Tpr7g1552 . . . . . . . .
Pvu11g2026 . . . Aed4g1445 . Ahy20g3112 . Aip10g03520 . . . . . . . Bva07g01067 Car07g02477 . . . . . . Gma15g02175 . . . . . . . . . . . . . . . Mal5g1864 . . . Mtr8g1300 . . . . . . . . . . . Tpr7g1553 . Tsu08g01487 . . . . . .
Pvu11g2027 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Aip Aip10g03517 Chr10 133618825 133624562 +
Aip Aip10g03520 Chr10 133635045 133640262 -
Cca Cca04g01720 Chr04 29494320 29495038 -
Pumo Pumo10g02788 Chr10 54028178 54030636 -
Pvu Pvu11g2018 Chr11 47035109 47035573 +
Ahy Ahy10g2553 Chr10 115034228 115045539 -
Bisa Bisa02g2480 Chr02 62173785 62183194 -
Cca Cca04g01720 Chr04 29494320 29495038 -
Enph Enph8g1488 Chr8 25924598 25925297 -
Lan Lan7g0721 Chr7 6132991 6136365 +
Mal Mal5g1882 Chr5 39751480 39773056 -
Mesa Mesa29g03834 Chr29 62018761 62024781 +
Mtr Mtr8g1307 Chr8 16032365 16044332 -
Prci Prci6g2263 Chr6 32839437 32847984 +
Pste Pste1g00607 Chr1 1965991 1968997 +
Pumo Pumo10g02788 Chr10 54028178 54030636 -
Ssu Ssu2g0304 Chr2 18960023 18960560 -
Sto Sto4g2412 Chr4 25526112 25526661 -
Vimu Vimu5g01049 Chr5 17008460 17010613 +
Pvu Pvu11g2019 Chr11 47041343 47044809 +
Pste Pste1g00292 Chr1 1036805 1051964 +
Pvu Pvu11g2020 Chr11 47045788 47047506 +
Pste Pste1g00845 Chr1 2612659 2622537 +
Ssu Ssu2g0298 Chr2 18655838 18656377 -
Vimu Vimu5g01050 Chr5 17010714 17011256 -
Pvu Pvu11g2021 Chr11 47048914 47051940 -
Aed Aed4g1442 Chr4 18944326 18955297 -
Cca Cca04g01769 Chr04 31748452 31775016 +
Mal Mal5g1880 Chr5 39543013 39545745 -
Mtr Mtr8g1306 Chr8 16026891 16030825 -
Ssu Ssu2g0296 Chr2 18513405 18516310 -
Pvu Pvu11g2022 Chr11 47054691 47057647 -
Tpr Tpr7g1550 Chr7 17459663 17463273 +
Tsu Tsu08g01489 Chr08 17210193 17213452 -
Pvu Pvu11g2023 Chr11 47061355 47062308 -
Aed Aed4g1443 Chr4 18959889 18964115 -
Ahy Ahy3g0921 Chr3 10504609 10510897 +
Cca Cca04g01770 Chr04 31775133 31775635 +
Mtr Mtr8g1304 Chr8 15990970 15992851 -
Pumo Pumo10g02788 Chr10 54028178 54030636 -
Spst Spst11g00009 Chr11 116429 122023 -
Ssu Ssu2g0294 Chr2 18312142 18317703 -
Tpr Tpr7g1551 Chr7 17470036 17473729 +
Vian Vian5g00564 Chr5 20234085 20234986 -
Vimu Vimu5g01052 Chr5 17034309 17037444 -
Pvu Pvu11g2024 Chr11 47065760 47068779 -
Mal Mal5g1865 Chr5 38686992 38690624 -
Tsu Tsu08g01488 Chr08 17153948 17158004 -
Pvu Pvu11g2025 Chr11 47070216 47078390 -
Aed Aed4g1444 Chr4 18967149 18972491 -
Ahy Ahy20g3109 Chr20 141741349 141749412 +
Aip Aip10g03517 Chr10 133618825 133624562 +
Car Car07g02472 Chr07 46391691 46397968 +
Mtr Mtr8g1301 Chr8 15949161 15953028 -
Tpr Tpr7g1552 Chr7 17474623 17561510 +
Pvu Pvu11g2026 Chr11 47084720 47090521 -
Aed Aed4g1445 Chr4 18985181 18988725 -
Ahy Ahy20g3112 Chr20 141759595 141764801 -
Aip Aip10g03520 Chr10 133635045 133640262 -
Bva Bva07g01067 Chr07 12229790 12233863 +
Car Car07g02477 Chr07 46454913 46459185 -
Gma Gma15g02175 Chr15 44494259 44516461 -
Mal Mal5g1864 Chr5 38681539 38683501 -
Mtr Mtr8g1300 Chr8 15937998 15942279 -
Tpr Tpr7g1553 Chr7 17498377 17502115 +
Tsu Tsu08g01487 Chr08 17141357 17147344 -
Pvu Pvu11g2027 Chr11 47094031 47097612 +
Lan Lan7g0721 Chr7 6132991 6136365 +