Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu11g1998 . . . Aed4g1435 . . . . Alju10g1738 . . Apr5g0881 . . Bisa02g2465 . Car07g02459 Cca04g01760 Dere07g1727 . Enph8g1499 Glsi04g1751 Gma13g01663 Gma15g02168 . Gso11g2216 Lal1g0662 . . . . Lan13g0663 . Lasa4g01262 . . . Lele32g1104 . Mal5g1896 Mepo1g03348 Mesa29g03819 . Mtr8g1317 . Phco9g02075 . . . Pumo10g02780 Rops3g02496 Seca4g09724 Spst11g00013 Ssu2g0328 Sto4g2416 Tpr7g1547 Trre15g01563 Tsu08g01495 . Vifa4g00519 Vimu5g01029 Viun11g00330 Vivi7g04873 .
Pvu11g1999 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Pste1g00331 . . . . . . . . . . . . . . .
Pvu11g2000 . . . . . . . . . . . . . . . . . . . . . . . . . Gso11g2217 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g2001 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g2002 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g2003 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g2004 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g2005 . . . Aed4g1437 . . . . . . . . . . . . . Cca04g01764 . . . . . . . Gso11g2218 . . Lal9g0633 . . . . . . . . . Lja3g2519 . . . . . . . . . . Pumo10g02785 . . . . . . . . Vian5g00563 . . Viun11g00327 . .
Pvu11g2006 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco9g02079 . . . . . . Spst11g00010 . . . . . . . Vimu5g01037 . . .
Pvu11g2007 . . . . . . . . . . . . . . . . . . . . . . . . . Gso11g2219 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Pvu Pvu11g1998 Chr11 46872044 46878479 -
Aed Aed4g1435 Chr4 18851169 18858391 -
Alju Alju10g1738 Chr10 30210836 30238014 -
Apr Apr5g0881 Chr5 12919180 12930378 -
Bisa Bisa02g2465 Chr02 61777885 61800108 -
Car Car07g02459 Chr07 45979697 45986053 -
Cca Cca04g01760 Chr04 31453067 31462567 -
Dere Dere07g1727 Chr07 27343495 27350547 -
Enph Enph8g1499 Chr8 26391320 26398390 +
Glsi Glsi04g1751 Chr04 64124958 64131502 -
Gma Gma13g01663 Chr13 31496667 31507258 -
Gma Gma15g02168 Chr15 44340946 44342633 -
Gso Gso11g2216 Chr11 37815094 37825732 -
Lal Lal1g0662 Chr1 4329061 4336107 +
Lan Lan13g0663 Chr13 5649405 5656246 +
Lasa Lasa4g01262 Chr4 108944831 108951012 +
Lele Lele32g1104 Chr32 10259904 10271259 +
Mal Mal5g1896 Chr5 40244517 40253198 +
Mepo Mepo1g03348 Chr1 38556561 38562976 -
Mesa Mesa29g03819 Chr29 61807153 61814163 -
Mtr Mtr8g1317 Chr8 16225186 16233067 +
Phco Phco9g02075 Chr9 45769456 45775310 -
Pumo Pumo10g02780 Chr10 53197600 53204529 -
Rops Rops3g02496 Chr3 51579874 51587168 -
Seca Seca4g09724 Chr4 228374652 228383710 -
Spst Spst11g00013 Chr11 224068 243594 +
Ssu Ssu2g0328 Chr2 21506369 21509832 +
Sto Sto4g2416 Chr4 25563724 25565181 +
Tpr Tpr7g1547 Chr7 17395844 17405284 -
Trre Trre15g01563 Chr15 12510191 12513484 +
Tsu Tsu08g01495 Chr08 17297242 17305392 +
Vifa Vifa4g00519 Chr4 143784317 143787489 -
Vimu Vimu5g01029 Chr5 16609842 16614405 -
Viun Viun11g00330 Chr11 2795286 2802474 +
Vivi Vivi7g04873 Chr7 126978165 126983735 +
Pvu Pvu11g1999 Chr11 46879480 46883100 +
Pste Pste1g00331 Chr1 1168684 1169280 -
Pvu Pvu11g2000 Chr11 46884221 46887786 +
Gso Gso11g2217 Chr11 37835277 37840907 +
Pvu Pvu11g2001 Chr11 46888055 46889428 +
Pvu Pvu11g2002 Chr11 46891762 46895553 +
Pvu Pvu11g2003 Chr11 46899491 46903293 +
Pvu Pvu11g2004 Chr11 46916084 46919998 +
Pvu Pvu11g2005 Chr11 46921417 46922009 -
Aed Aed4g1437 Chr4 18882362 18887503 -
Cca Cca04g01764 Chr04 31519786 31541784 -
Gso Gso11g2218 Chr11 37842026 37854052 -
Lal Lal9g0633 Chr9 4311739 4316849 -
Lja Lja3g2519 Chr3 32249063 32262093 +
Pumo Pumo10g02785 Chr10 53828240 53831667 -
Vian Vian5g00563 Chr5 20199935 20207018 -
Viun Viun11g00327 Chr11 2744422 2750206 +
Pvu Pvu11g2006 Chr11 46931137 46933245 -
Phco Phco9g02079 Chr9 45833641 45839283 -
Spst Spst11g00010 Chr11 131787 134738 +
Vimu Vimu5g01037 Chr5 16764268 16770063 -
Pvu Pvu11g2007 Chr11 46949131 46953200 +
Gso Gso11g2219 Chr11 37873864 37879846 +