Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu11g1928 Acco08g1737 Accr13g01692 . Aed4g1377 Aev08g1493 . . . Alju10g1701 . . Apr5g0793 . Bach9g01359 Bisa02g2431 Bva07g01010 Car07g02415 Cca04g01600 Dere07g1490 . Enph8g1555 Glsi04g1702 . . . . . . . . . . . Lasa4g01343 . Lele30g0330 . . Lja3g2594 Mal5g1986 Mepo1g03283 Mesa29g03724 Mibi07g1641 Mtr8g1365 . Phco9g02022 Prci6g1897 . Pste1g01382 Pumo10g02494 Rops3g02400 Seca4g09670 Spst11g00051 Ssu2g0409 Sto4g2447 Tpr7g1507 Trre15g01624 Tsu08g01557 Vian5g00414 Vifa4g00475 Vimu5g00765 . Vivi7g04914 .
Pvu11g1929 . . . Aed4g1378 Aev08g1492 . . . . . . Apr5g0794 . . . Bva07g01011 Car07g02416 Cca04g01599 . . Enph8g1541 . Gma08g02105 . . Gso8g1904 . Lal2g0724 . . . . . Lasa4g01344 . . . . Lja3g2593 Mal5g1985 Mepo1g03284 Mesa29g03725 . Mtr8g1364 . Phco9g02023 Prci6g1896 Psa4g3095 Pste1g01353 Pumo10g02493 . . Spst11g00050 Ssu2g0408 Sto4g2444 Tpr7g1508 . Tsu08g01556 Vian5g00413 Vifa4g00476 Vimu5g00763 . . .
Pvu11g1930 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1931 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco9g02026 . . . . . . . . . . . . . . . . . .
Pvu11g1932 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1933 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco9g02027 . . . . . . . . . . . . . . . . . .
Pvu11g1934 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1935 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1936 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1937 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Pvu Pvu11g1928 Chr11 46210796 46218112 +
Acco Acco08g1737 Chr08 27013857 27026977 +
Accr Accr13g01692 Chr13 32074174 32083650 +
Aed Aed4g1377 Chr4 17801669 17807055 +
Aev Aev08g1493 Chr08 10461903 10474815 -
Alju Alju10g1701 Chr10 25665782 25678596 +
Apr Apr5g0793 Chr5 11401699 11415831 +
Bach Bach9g01359 Chr9 11553471 11557387 -
Bisa Bisa02g2431 Chr02 60656083 60670867 +
Bva Bva07g01010 Chr07 11842288 11845993 +
Car Car07g02415 Chr07 44388217 44394138 +
Cca Cca04g01600 Chr04 24205677 24217117 -
Dere Dere07g1490 Chr07 19788420 19798588 -
Enph Enph8g1555 Chr8 27936733 27953540 -
Glsi Glsi04g1702 Chr04 60536651 60550156 +
Lasa Lasa4g01343 Chr4 128568381 128575047 +
Lele Lele30g0330 Chr30 7912714 7914102 +
Lja Lja3g2594 Chr3 35151065 35158750 -
Mal Mal5g1986 Chr5 43394793 43402104 -
Mepo Mepo1g03283 Chr1 37923307 37930973 +
Mesa Mesa29g03724 Chr29 60548952 60566836 +
Mibi Mibi07g1641 Chr07 31765402 31786853 +
Mtr Mtr8g1365 Chr8 16818513 16826081 -
Phco Phco9g02022 Chr9 45173792 45181222 +
Prci Prci6g1897 Chr6 17361520 17374059 -
Pste Pste1g01382 Chr1 4391171 4404948 -
Pumo Pumo10g02494 Chr10 42089987 42094613 -
Rops Rops3g02400 Chr3 49062996 49072008 +
Seca Seca4g09670 Chr4 227436650 227445197 +
Spst Spst11g00051 Chr11 914561 928888 -
Ssu Ssu2g0409 Chr2 24372287 24386599 -
Sto Sto4g2447 Chr4 25858397 25864625 -
Tpr Tpr7g1507 Chr7 16785641 16793226 +
Trre Trre15g01624 Chr15 12997522 13003070 -
Tsu Tsu08g01557 Chr08 18241927 18249390 -
Vian Vian5g00414 Chr5 10657279 10672363 -
Vifa Vifa4g00475 Chr4 132818825 132824526 +
Vimu Vimu5g00765 Chr5 9471914 9478943 -
Vivi Vivi7g04914 Chr7 128058758 128064373 -
Pvu Pvu11g1929 Chr11 46222024 46227927 +
Aed Aed4g1378 Chr4 17812897 17818591 +
Aev Aev08g1492 Chr08 10448090 10453967 -
Apr Apr5g0794 Chr5 11423323 11428298 +
Bva Bva07g01011 Chr07 11848529 11853077 +
Car Car07g02416 Chr07 44397750 44405419 +
Cca Cca04g01599 Chr04 24177614 24183246 -
Enph Enph8g1541 Chr8 27487819 27493781 -
Gma Gma08g02105 Chr08 19033011 19038014 -
Gso Gso8g1904 Chr8 18778104 18783634 -
Lal Lal2g0724 Chr2 4519029 4532416 +
Lasa Lasa4g01344 Chr4 128600061 128603462 +
Lja Lja3g2593 Chr3 35143705 35148857 -
Mal Mal5g1985 Chr5 43384561 43389652 -
Mepo Mepo1g03284 Chr1 37934062 37939384 +
Mesa Mesa29g03725 Chr29 60570640 60575278 +
Mtr Mtr8g1364 Chr8 16808471 16815200 -
Phco Phco9g02023 Chr9 45186197 45191537 +
Prci Prci6g1896 Chr6 17316073 17321789 -
Psa Psa4g3095 Chr4 253521711 253526205 -
Pste Pste1g01353 Chr1 4288329 4293595 -
Pumo Pumo10g02493 Chr10 42024227 42030250 -
Spst Spst11g00050 Chr11 906290 911277 -
Ssu Ssu2g0408 Chr2 24344913 24349846 -
Sto Sto4g2444 Chr4 25838626 25843772 -
Tpr Tpr7g1508 Chr7 16798143 16803320 +
Tsu Tsu08g01556 Chr08 18233575 18238322 -
Vian Vian5g00413 Chr5 10591001 10595657 -
Vifa Vifa4g00476 Chr4 133014151 133017613 +
Vimu Vimu5g00763 Chr5 9455606 9460910 -
Pvu Pvu11g1930 Chr11 46230789 46231092 +
Pvu Pvu11g1931 Chr11 46257871 46258171 -
Phco Phco9g02026 Chr9 45207158 45214770 +
Pvu Pvu11g1932 Chr11 46262032 46262411 +
Pvu Pvu11g1933 Chr11 46269457 46269765 +
Phco Phco9g02027 Chr9 45219813 45220117 +
Pvu Pvu11g1934 Chr11 46286229 46286529 +
Pvu Pvu11g1935 Chr11 46292822 46293298 +
Pvu Pvu11g1936 Chr11 46296130 46296605 +
Pvu Pvu11g1937 Chr11 46299060 46299413 +