Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu11g1918 . . . Aed4g1369 . . . . . . . . . Bach9g01362 Bisa02g2429 Bva07g01007 Car07g02410 Cca04g01608 Dere07g1491 . . Glsi04g1698 Gma08g02109 . . Gso8g1908 Lal1g0676 Lal2g0722 . . . Lan13g0675 . Lasa4g01336 . . . . . Mal5g1996 . . . . . Phco9g02015 . . Pste1g01550 Pumo10g02502 . . . Ssu2g0420 Sto4g2449 Tpr7g1504 . Tsu08g01561 Vian5g00418 Vifa4g00472 . . Vivi7g04917 .
Pvu11g1919 . . . . . . . . . . . . . . . . . Cca04g01604 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Pumo10g02498 . . . . . . . . . . . . . .
Pvu11g1920 . . . Aed4g1372 . . . . . . . . . . . . . Cca04g01603 . . . . . . . . . . . . . . . . . . . . Lja3g2599 . . . . . . Phco9g02017 . . Pste1g01448 Pumo10g02497 Rops3g02397 Seca4g09661 Spst11g00055 Ssu2g0416 . . . . Vian5g00416 . Vimu5g00770 . . .
Pvu11g1921 . . . . Aev08g1348 . . . . . . Apr5g0791 . . . . . Cca04g01602 . . . . Gma08g02108 . . Gso8g1906 . . . . . . . . . . . . Lja3g2596 . . . . . . Phco9g02018 . . Pste1g01424 Pumo10g02496 Rops3g02398 Seca4g09665 Spst11g00054 Ssu2g0414 . . . . Vian5g00415 . Vimu5g00768 Viun11g00663 . .
Pvu11g1922 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1923 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco9g02019 . . . . . . . . . . . . . . . . . .
Pvu11g1924 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1925 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1926 . . . . Aev08g1495 . . . . . . . Arst3g05310 . . . Car07g02414 Cca04g01601 . . . . Gma08g02106 . . Gso8g1905 Lal1g0674 . . . . Lan13g0674 Lapu5g00323 Lasa4g01271 . . . . Lja3g2699 Mal5g1992 . . . . . Phco9g02021 . . Pste1g01402 Pumo10g02495 Rops3g02399 Seca4g06916 Spst11g00053 . . . . Tsu08g01558 . Vifa4g00403 Vimu5g00767 . . .
Pvu11g1927 . . . Aed4g1376 Aev08g1494 . . . . . . Apr5g0792 Arst3g05309 Bach9g01360 . Bva07g01009 . . . . . . . . . . . . . . . . . Lasa4g01338 . . . . . Mal5g1988 Mepo1g03281 . . Mtr8g1366 . . . . Pste1g01395 . . . . Ssu2g0410 . Tpr7g1505 . . . . Vimu5g00766 . . .
   
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Select Species Gene Chromosome Start End Strand
Arst Arst3g05310 Chr3 128155078 128164003 +
Vifa Vifa4g00403 Chr4 108647884 108649097 +
Lapu Lapu5g00323 Chr5 2678908 2688299 -
Lja Lja3g2699 Chr3 39042245 39052007 -
Pvu Pvu11g1918 Chr11 46142230 46145052 -
Aed Aed4g1369 Chr4 17488362 17492858 -
Bach Bach9g01362 Chr9 11575045 11578668 +
Bisa Bisa02g2429 Chr02 60607759 60613123 -
Bva Bva07g01007 Chr07 11822068 11826223 -
Car Car07g02410 Chr07 44293935 44295446 -
Cca Cca04g01608 Chr04 24395830 24401703 +
Dere Dere07g1491 Chr07 19806722 19812304 +
Glsi Glsi04g1698 Chr04 60441401 60446380 -
Gma Gma08g02109 Chr08 19131605 19137967 +
Gso Gso8g1908 Chr8 18879374 18883578 +
Lal Lal1g0676 Chr1 4410381 4414130 +
Lal Lal2g0722 Chr2 4495951 4500211 +
Lan Lan13g0675 Chr13 5848300 5852981 -
Lasa Lasa4g01336 Chr4 127354105 127359101 -
Mal Mal5g1996 Chr5 43926288 43933475 +
Phco Phco9g02015 Chr9 45109655 45112084 -
Pste Pste1g01550 Chr1 4829284 4835667 +
Pumo Pumo10g02502 Chr10 42446351 42450407 +
Ssu Ssu2g0420 Chr2 24787521 24793218 +
Sto Sto4g2449 Chr4 25870401 25874966 +
Tpr Tpr7g1504 Chr7 16753340 16758512 -
Tsu Tsu08g01561 Chr08 18364369 18368862 +
Vian Vian5g00418 Chr5 10842619 10845725 +
Vifa Vifa4g00472 Chr4 131548663 131553505 -
Vivi Vivi7g04917 Chr7 128133667 128138163 +
Pvu Pvu11g1919 Chr11 46147095 46149400 +
Cca Cca04g01604 Chr04 24301672 24309779 -
Pumo Pumo10g02498 Chr10 42275008 42280918 -
Pvu Pvu11g1920 Chr11 46151316 46157595 -
Aed Aed4g1372 Chr4 17711478 17720194 -
Cca Cca04g01603 Chr04 24294700 24300768 +
Lja Lja3g2599 Chr3 35276303 35282598 +
Phco Phco9g02017 Chr9 45118315 45124120 -
Pste Pste1g01448 Chr1 4566022 4573650 +
Pumo Pumo10g02497 Chr10 42218217 42224394 +
Rops Rops3g02397 Chr3 48986178 48996036 -
Seca Seca4g09661 Chr4 227259304 227266003 -
Spst Spst11g00055 Chr11 986757 991473 +
Ssu Ssu2g0416 Chr2 24639004 24641268 -
Vian Vian5g00416 Chr5 10796592 10802382 +
Vimu Vimu5g00770 Chr5 9540176 9544977 +
Pvu Pvu11g1921 Chr11 46162054 46170610 +
Aev Aev08g1348 Chr08 8764632 8780854 +
Apr Apr5g0791 Chr5 11351464 11362636 +
Cca Cca04g01602 Chr04 24276393 24293009 +
Gma Gma08g02108 Chr08 19098636 19115160 -
Gso Gso8g1906 Chr8 18845230 18861065 -
Lja Lja3g2596 Chr3 35200655 35211100 -
Phco Phco9g02018 Chr9 45124310 45135786 +
Pste Pste1g01424 Chr1 4499938 4516866 -
Pumo Pumo10g02496 Chr10 42185492 42197770 -
Rops Rops3g02398 Chr3 49001127 49017323 +
Seca Seca4g09665 Chr4 227360630 227387352 +
Spst Spst11g00054 Chr11 975804 982588 -
Ssu Ssu2g0414 Chr2 24500081 24507617 -
Vian Vian5g00415 Chr5 10745730 10757505 -
Vimu Vimu5g00768 Chr5 9519650 9524156 -
Viun Viun11g00663 Chr11 7858544 7863287 +
Pvu Pvu11g1922 Chr11 46178089 46178307 +
Pvu Pvu11g1923 Chr11 46179785 46180000 +
Phco Phco9g02019 Chr9 45139384 45141607 +
Pvu Pvu11g1924 Chr11 46183401 46183619 +
Pvu Pvu11g1925 Chr11 46186888 46187106 +
Pvu Pvu11g1926 Chr11 46188434 46193793 +
Aev Aev08g1495 Chr08 10485403 10510110 -
Arst Arst3g05310 Chr3 128155078 128164003 +
Car Car07g02414 Chr07 44350680 44378436 +
Cca Cca04g01601 Chr04 24218898 24262415 -
Gma Gma08g02106 Chr08 19051583 19079564 -
Gso Gso8g1905 Chr8 18795629 18825796 -
Lal Lal1g0674 Chr1 4394957 4408933 -
Lan Lan13g0674 Chr13 5779323 5798265 -
Lapu Lapu5g00323 Chr5 2678908 2688299 -
Lasa Lasa4g01271 Chr4 111643883 111652319 -
Lja Lja3g2699 Chr3 39042245 39052007 -
Mal Mal5g1992 Chr5 43803104 43821340 +
Phco Phco9g02021 Chr9 45156117 45172732 +
Pste Pste1g01402 Chr1 4444783 4457709 -
Pumo Pumo10g02495 Chr10 42097810 42114301 -
Rops Rops3g02399 Chr3 49027002 49058716 +
Seca Seca4g06916 Chr4 145901619 145906480 -
Spst Spst11g00053 Chr11 941308 975382 -
Tsu Tsu08g01558 Chr08 18259012 18271255 -
Vifa Vifa4g00403 Chr4 108647884 108649097 +
Vimu Vimu5g00767 Chr5 9483849 9496635 -
Pvu Pvu11g1927 Chr11 46199081 46209866 +
Aed Aed4g1376 Chr4 17782334 17796753 +
Aev Aev08g1494 Chr08 10481206 10485392 -
Apr Apr5g0792 Chr5 11370602 11397642 +
Arst Arst3g05309 Chr3 128155078 128164003 +
Bach Bach9g01360 Chr9 11558938 11568925 -
Bva Bva07g01009 Chr07 11831062 11841641 +
Lasa Lasa4g01338 Chr4 128368812 128381993 +
Mal Mal5g1988 Chr5 43727669 43741878 -
Mepo Mepo1g03281 Chr1 37895596 37914845 +
Mtr Mtr8g1366 Chr8 16829271 16848488 -
Pste Pste1g01395 Chr1 4429212 4433145 -
Ssu Ssu2g0410 Chr2 24388980 24415227 -
Tpr Tpr7g1505 Chr7 16777928 16781120 +
Vimu Vimu5g00766 Chr5 9479755 9483027 -