Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu11g1938 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1939 . . . . . . . . . . . Apr5g0869 . . . . . . . . . . Gma08g02086 . . . . . . Lan7g0726 . . . . . . . . . . . . . . . Phco9g02030 . . . . . . . . . . . . . . . . . .
Pvu11g1940 . . . . . . . . . . . Apr5g0870 . . . . . . . . . . Gma08g02085 . . . . . Lal9g0646 . Lan8g1280 Lan13g0668 . . . . . . . . . . . . . Phco9g02031 . . Pste1g01018 . . . . . . . . . . . . . . .
Pvu11g1941 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1942 . . . . . Ahy20g3091 Ahy10g2530 Aip10g03500 . . . Apr5g0868 . . . . . . . . . . . . . . Lal1g0669 . Lal9g0649 . Lan8g1282 Lan13g0669 . . . . . . . . . . . . . Phco9g02032 . . Pste1g01228 . . . . . . . . . . . . . . .
Pvu11g1943 . . . . Aev08g1333 . . . . . . Apr5g0867 . . . . . . . . . . . . . . . . Lal9g0650 . Lan8g1283 . . . . . . . . . . . . . . . . . Pste1g01222 . . . . . . . . . . . . . . .
Pvu11g1944 Acco08g1766 Accr1g02241 . . Aev08g1326 . . . Alju10g1722 . . Apr5g0865 . . Bisa02g2447 . . . Dere07g1482 . Enph8g1523 Glsi04g1719 . . . . . . Lal9g0652 Lan7g0733 Lan8g1285 . . . Lele29g1195 . Lele31g0366 . . . . . Mibi07g1654 . . Phco9g02034 . . Pste1g01194 . . . . . Sto4g2433 . . . . . . . . .
Pvu11g1945 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Pste1g01170 . . . Spst11g00041 . . . . . . . . . . .
Pvu11g1946 Acco08g1767 Accr1g02250 Adu10g02797 Aed4g1387 . . . Aip10g03501 Alju10g1724 . . Apr5g0864 . Bach9g01341 Bisa02g2451 Bva07g01036 Car07g02430 . Dere07g1477 . Enph8g1521 Glsi04g1727 . Gma15g02127 . Gso8g1894 . . . Lan7g0734 Lan8g1286 . Lapu5g00329 . Lele29g1197 . Lele31g0365 . Lja3g2707 Mal5g1965 . . . Mtr8g1355 . Phco9g02037 . . Pste1g01165 . . . . . Sto4g2428 . . . . . . . . .
Pvu11g1947 . . . Aed4g1388 . . . . . . . Apr5g0863 . . . . . Cca04g01723 . . . . . . Gso15g1867 . Lal1g0671 . . . Lan8g1287 Lan13g0670 . Lasa4g01351 . . . . . . . . . . . Phco9g02038 . . Pste1g01161 . . . . . . Tpr7g1517 . Tsu08g01546 . . . . Vivi7g04906 .
   
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Select Species Gene Chromosome Start End Strand
Aip Aip10g03500 Chr10 133456701 133460979 +
Accr Accr1g02250 Chr1 57174687 57178166 -
Adu Adu10g02797 Chr10 104550630 104560748 +
Aip Aip10g03501 Chr10 133465007 133468442 +
Lapu Lapu5g00329 Chr5 2731244 2735854 +
Lja Lja3g2707 Chr3 39293706 39298989 +
Apr Apr5g0870 Chr5 12776817 12777579 -
Pvu Pvu11g1938 Chr11 46302869 46303223 +
Pvu Pvu11g1939 Chr11 46321070 46325055 +
Apr Apr5g0869 Chr5 12770770 12775250 +
Gma Gma08g02086 Chr08 18775915 18778410 -
Lan Lan7g0726 Chr7 6210829 6214936 -
Phco Phco9g02030 Chr9 45282982 45285894 +
Pvu Pvu11g1940 Chr11 46326502 46327188 -
Apr Apr5g0870 Chr5 12776817 12777579 -
Gma Gma08g02085 Chr08 18770252 18771103 -
Lal Lal9g0646 Chr9 4456829 4457527 -
Lan Lan8g1280 Chr8 19306234 19307301 -
Lan Lan13g0668 Chr13 5721084 5721928 -
Phco Phco9g02031 Chr9 45287956 45288642 -
Pste Pste1g01018 Chr1 3249214 3253317 +
Pvu Pvu11g1941 Chr11 46328411 46329350 -
Pvu Pvu11g1942 Chr11 46338494 46343223 +
Ahy Ahy20g3091 Chr20 141591440 141595992 +
Ahy Ahy10g2530 Chr10 114832868 114837433 +
Aip Aip10g03500 Chr10 133456701 133460979 +
Apr Apr5g0868 Chr5 12757600 12761956 -
Lal Lal1g0669 Chr1 4376654 4379867 +
Lal Lal9g0649 Chr9 4468821 4473423 +
Lan Lan8g1282 Chr8 19324549 19329002 +
Lan Lan13g0669 Chr13 5735007 5737946 +
Phco Phco9g02032 Chr9 45302891 45305766 +
Pste Pste1g01228 Chr1 3923807 3931602 +
Pvu Pvu11g1943 Chr11 46349010 46354111 +
Aev Aev08g1333 Chr08 8592073 8596223 -
Apr Apr5g0867 Chr5 12747120 12751457 -
Lal Lal9g0650 Chr9 4474766 4479364 +
Lan Lan8g1283 Chr8 19330338 19334589 +
Pste Pste1g01222 Chr1 3903862 3913156 -
Pvu Pvu11g1944 Chr11 46359727 46367224 +
Acco Acco08g1766 Chr08 27656885 27668348 -
Accr Accr1g02241 Chr1 57045405 57051547 -
Aev Aev08g1326 Chr08 8522968 8534470 -
Alju Alju10g1722 Chr10 26951032 26960709 -
Apr Apr5g0865 Chr5 12694133 12704490 -
Bisa Bisa02g2447 Chr02 61091402 61106465 -
Dere Dere07g1482 Chr07 19662855 19670449 +
Enph Enph8g1523 Chr8 27134218 27141347 +
Glsi Glsi04g1719 Chr04 61234371 61251841 -
Lal Lal9g0652 Chr9 4485190 4494079 +
Lan Lan7g0733 Chr7 6260782 6270526 +
Lan Lan8g1285 Chr8 19352524 19378115 +
Lele Lele29g1195 Chr29 14128380 14131531 -
Lele Lele31g0366 Chr31 10895473 10910438 +
Mibi Mibi07g1654 Chr07 32062022 32073175 -
Phco Phco9g02034 Chr9 45349543 45356933 +
Pste Pste1g01194 Chr1 3804725 3811946 +
Sto Sto4g2433 Chr4 25773162 25777546 +
Pvu Pvu11g1945 Chr11 46369214 46369922 +
Pste Pste1g01170 Chr1 3734784 3735194 -
Spst Spst11g00041 Chr11 735285 735695 +
Pvu Pvu11g1946 Chr11 46378238 46384320 -
Acco Acco08g1767 Chr08 27728361 27732171 -
Accr Accr1g02250 Chr1 57174687 57178166 -
Adu Adu10g02797 Chr10 104550630 104560748 +
Aed Aed4g1387 Chr4 18097684 18105503 -
Aip Aip10g03501 Chr10 133465007 133468442 +
Alju Alju10g1724 Chr10 27011948 27017315 -
Apr Apr5g0864 Chr5 12684194 12692566 +
Bach Bach9g01341 Chr9 11149866 11154252 -
Bisa Bisa02g2451 Chr02 61217637 61220809 -
Bva Bva07g01036 Chr07 12015768 12022220 +
Car Car07g02430 Chr07 44786162 44793443 +
Dere Dere07g1477 Chr07 19604783 19613916 +
Enph Enph8g1521 Chr8 27091722 27099706 +
Glsi Glsi04g1727 Chr04 61743264 61751745 -
Gma Gma15g02127 Chr15 42898341 42899919 +
Gso Gso8g1894 Chr8 18603064 18611355 -
Lan Lan7g0734 Chr7 6270947 6276450 -
Lan Lan8g1286 Chr8 19362680 19367802 -
Lapu Lapu5g00329 Chr5 2731244 2735854 +
Lele Lele29g1197 Chr29 14174637 14179481 -
Lele Lele31g0365 Chr31 10850004 10853424 +
Lja Lja3g2707 Chr3 39293706 39298989 +
Mal Mal5g1965 Chr5 42725310 42728735 -
Mtr Mtr8g1355 Chr8 16687822 16690775 -
Phco Phco9g02037 Chr9 45372721 45377893 -
Pste Pste1g01165 Chr1 3716564 3726139 +
Sto Sto4g2428 Chr4 25686515 25689833 +
Pvu Pvu11g1947 Chr11 46398884 46401536 +
Aed Aed4g1388 Chr4 18122873 18124057 +
Apr Apr5g0863 Chr5 12677854 12679659 -
Cca Cca04g01723 Chr04 29582109 29583293 +
Gso Gso15g1867 Chr15 40334388 40336914 -
Lal Lal1g0671 Chr1 4382556 4387162 +
Lan Lan8g1287 Chr8 19375766 19378270 +
Lan Lan13g0670 Chr13 5739147 5741578 +
Lasa Lasa4g01351 Chr4 129497123 129498331 -
Phco Phco9g02038 Chr9 45382393 45383577 +
Pste Pste1g01161 Chr1 3712724 3713908 -
Tpr Tpr7g1517 Chr7 16966505 16969136 -
Tsu Tsu08g01546 Chr08 18128829 18131913 +
Vivi Vivi7g04906 Chr7 127861243 127864204 +