Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu11g1838 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1839 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Vimu5g00929 . . .
Pvu11g1840 . . . Aed4g1241 . . . . . . . . . . . . . Cca04g01707 . . . . . . . . Lal1g0637 . . . . Lan13g0634 . . . . . . Lja3g2633 Mal5g2165 Mepo1g03149 Mesa29g03548 . Mtr8g1493 . Phco9g01934 . . . . . Seca4g07958 Spst11g00077 Ssu2g0503 . Tpr7g1393 . Tsu08g01675 Vian5g00507 . Vimu5g00924 . . .
Pvu11g1841 . . Adu03g01706 Aed4g1244 . . Ahy13g1836 Aip03g02038 . Amo13g2314 . . . . . . Car07g02334 . . . . . Gma08g02179 . . Gso8g1967 . . Lal9g0601 . . . . . . . . . Lja3g2634 Mal5g2158 . Mesa29g03553 . Mtr8g1490 . Phco9g01935 . . Pste1g00248 . . . Spst11g00447 Ssu2g0501 . Tpr7g1395 Trre15g01720 Tsu08g01673 . . Vimu5g00914 . Vivi7g00178 .
Pvu11g1842 . . . . . . . . . . . . Arst7g01981 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco9g01936 . . . . . . . . . . . . . . . . . .
Pvu11g1843 . . . Aed4g1245 . . . . . . . . . . . . Car07g02337 Cca04g01705 . Dod09g0754 . . Gma08g02180 . . Gso8g1968 Lal1g0638 . . . . Lan13g0635 . . . . . . Lja3g2638 Mal5g2141 Mepo1g03160 . . Mtr8g1482 . Phco9g01938 . . . . Rops3g02218 . Spst11g00446 Ssu2g0500 . Tpr7g1396 . Tsu08g01670 Vian5g00502 . Vimu5g00912 . . .
Pvu11g1844 . . . . . . . . . . . . . . . . . Cca04g01704 . Dod09g0755 . . . . . . Lal1g0684 . Lal9g0602 . . Lan13g0685 . . . . . . . Mal5g2140 Mepo1g03165 Mesa29g03572 . Mtr8g1481 . Phco9g01942 . . . . Rops3g02220 Seca4g07954 Spst11g00445 Ssu2g0499 . Tpr7g1398 Trre15g01715 Tsu08g01669 Vian5g00500 . . . . .
Pvu11g1845 . . . Aed4g1247 . . . . . . . . . . . . . . . . . . . . . . Lal1g0639 . . . . Lan13g0636 . . . . . . Lja3g2641 . . . . . . Phco9g01947 . . Pste1g00252 . . . . . . Tpr7g1432 . . . . Vimu5g00908 . . .
Pvu11g1846 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco9g01948 . . . . . . . . . . . . . . . . . .
Pvu11g1847 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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Select Species Gene Chromosome Start End Strand
Lja Lja3g2641 Chr3 36345730 36371925 -
Tpr Tpr7g1432 Chr7 15648561 15668838 -
Pvu Pvu11g1838 Chr11 45227572 45227597 +
Pvu Pvu11g1839 Chr11 45229261 45232258 +
Vimu Vimu5g00929 Chr5 13219449 13222489 -
Pvu Pvu11g1840 Chr11 45235921 45240792 +
Aed Aed4g1241 Chr4 12674102 12687967 +
Cca Cca04g01707 Chr04 28606844 28625873 +
Lal Lal1g0637 Chr1 4110033 4117506 +
Lan Lan13g0634 Chr13 5317321 5324671 +
Lja Lja3g2633 Chr3 36150073 36160562 +
Mal Mal5g2165 Chr5 52377608 52385327 +
Mepo Mepo1g03149 Chr1 35778964 35786276 -
Mesa Mesa29g03548 Chr29 56556025 56562150 -
Mtr Mtr8g1493 Chr8 19603457 19610820 +
Phco Phco9g01934 Chr9 44224938 44230720 +
Seca Seca4g07958 Chr4 185547883 185554860 -
Spst Spst11g00077 Chr11 1356250 1362156 +
Ssu Ssu2g0503 Chr2 28873215 28889473 -
Tpr Tpr7g1393 Chr7 14963684 14971292 -
Tsu Tsu08g01675 Chr08 20012007 20023561 +
Vian Vian5g00507 Chr5 15084756 15120177 +
Vimu Vimu5g00924 Chr5 13169540 13181316 -
Pvu Pvu11g1841 Chr11 45245362 45246167 +
Adu Adu03g01706 Chr03 28642487 28647746 -
Aed Aed4g1244 Chr4 12753826 12758182 +
Ahy Ahy13g1836 Chr13 30523629 30528761 -
Aip Aip03g02038 Chr03 29343532 29348628 -
Amo Amo13g2314 Chr13 39911315 39916465 -
Car Car07g02334 Chr07 40503220 40511784 +
Gma Gma08g02179 Chr08 20571780 20577216 +
Gso Gso8g1967 Chr8 20192174 20197522 +
Lal Lal9g0601 Chr9 4043836 4045781 +
Lja Lja3g2634 Chr3 36161491 36165646 +
Mal Mal5g2158 Chr5 51530971 51535168 -
Mesa Mesa29g03553 Chr29 57010330 57014539 +
Mtr Mtr8g1490 Chr8 19444727 19449633 -
Phco Phco9g01935 Chr9 44232332 44235569 +
Pste Pste1g00248 Chr1 876270 881549 +
Spst Spst11g00447 Chr11 25230986 25234918 -
Ssu Ssu2g0501 Chr2 28833811 28837955 -
Tpr Tpr7g1395 Chr7 14979109 14984795 +
Trre Trre15g01720 Chr15 13754757 13759968 -
Tsu Tsu08g01673 Chr08 19995552 19999851 -
Vimu Vimu5g00914 Chr5 12725133 12728880 -
Vivi Vivi7g00178 Chr7 10376917 10378858 +
Pvu Pvu11g1842 Chr11 45248730 45250485 -
Arst Arst7g01981 Chr7 35842797 35848382 +
Phco Phco9g01936 Chr9 44238495 44240099 -
Pvu Pvu11g1843 Chr11 45252346 45271824 -
Aed Aed4g1245 Chr4 12776462 12803692 -
Car Car07g02337 Chr07 40612688 40626761 -
Cca Cca04g01705 Chr04 28508794 28539647 +
Dod Dod09g0754 Chr09 18454873 18501585 -
Gma Gma08g02180 Chr08 20617005 20675142 -
Gso Gso8g1968 Chr8 20208550 20279098 -
Lal Lal1g0638 Chr1 4117975 4131444 -
Lan Lan13g0635 Chr13 5325491 5338910 -
Lja Lja3g2638 Chr3 36211939 36227579 -
Mal Mal5g2141 Chr5 50665293 50681694 +
Mepo Mepo1g03160 Chr1 36215470 36229287 -
Mtr Mtr8g1482 Chr8 19173949 19188120 +
Phco Phco9g01938 Chr9 44245652 44247391 -
Rops Rops3g02218 Chr3 43985660 44034026 -
Spst Spst11g00446 Chr11 25183455 25184011 +
Ssu Ssu2g0500 Chr2 28767639 28827703 +
Tpr Tpr7g1396 Chr7 14991820 15007147 -
Tsu Tsu08g01670 Chr08 19970695 19983660 +
Vian Vian5g00502 Chr5 14579109 14607330 +
Vimu Vimu5g00912 Chr5 12687542 12696576 +
Pvu Pvu11g1844 Chr11 45276949 45279683 -
Cca Cca04g01704 Chr04 28367070 28405054 -
Dod Dod09g0755 Chr09 18573565 18634718 +
Lal Lal1g0684 Chr1 4472532 4475126 +
Lal Lal9g0602 Chr9 4046574 4069188 -
Lan Lan13g0685 Chr13 6135214 6137781 +
Mal Mal5g2140 Chr5 50623229 50650147 +
Mepo Mepo1g03165 Chr1 36273023 36293777 -
Mesa Mesa29g03572 Chr29 57589174 57608388 -
Mtr Mtr8g1481 Chr8 19135310 19157795 +
Phco Phco9g01942 Chr9 44270211 44273449 -
Rops Rops3g02220 Chr3 44054709 44103238 -
Seca Seca4g07954 Chr4 185360260 185380078 +
Spst Spst11g00445 Chr11 25146338 25181263 +
Ssu Ssu2g0499 Chr2 28689310 28732198 +
Tpr Tpr7g1398 Chr7 15018293 15049679 -
Trre Trre15g01715 Chr15 13688403 13714987 +
Tsu Tsu08g01669 Chr08 19940724 19968212 +
Vian Vian5g00500 Chr5 14533374 14564707 +
Pvu Pvu11g1845 Chr11 45281568 45302058 -
Aed Aed4g1247 Chr4 12842521 12874153 -
Lal Lal1g0639 Chr1 4132293 4153738 -
Lan Lan13g0636 Chr13 5340628 5361529 -
Lja Lja3g2641 Chr3 36345730 36371925 -
Phco Phco9g01947 Chr9 44318084 44344208 -
Pste Pste1g00252 Chr1 889973 923839 -
Tpr Tpr7g1432 Chr7 15648561 15668838 -
Vimu Vimu5g00908 Chr5 12601002 12623114 +
Pvu Pvu11g1846 Chr11 45322849 45324374 +
Phco Phco9g01948 Chr9 44358158 44363040 +
Pvu Pvu11g1847 Chr11 45325490 45327824 +
Spst Spst11g00077 Chr11 1356250 1362156 +
Lal Lal1g0684 Chr1 4472532 4475126 +
Lan Lan13g0685 Chr13 6135214 6137781 +