Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu11g1828 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1829 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1830 . . . . . . . . . . . . . . . . . . . . . . . Gma15g02039 . . . . . . . . . . . . . . . . Mepo1g03133 . . Mtr8g1509 . . . . . . . . . . . . . Tsu08g01682 . . . . . .
Pvu11g1831 . . . . . . . . . . . . . . . . . Cca04g01714 . . . . . . . . . . . . . . . . . . . . . . Mepo1g03135 . . Mtr8g1508 . . . . . . . . . . . . . . . . . . . .
Pvu11g1832 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco9g01928 . . . . . . . . . . . . . . . . . .
Pvu11g1833 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco9g01929 . . . . . . . . . . . . . . . . . .
Pvu11g1834 . . . . . . . . . . . . . . . . . . . . . . . Gma15g02040 . . . . . . . . . . . . . . . Mal5g2168 . . . Mtr8g1497 . . . . . . . . . . . . . . . . . . . .
Pvu11g1835 Acco08g1700 Accr13g01651 . Aed4g1237 . . . . Alju10g1670 . . . Arst7g01999 . Bisa02g2398 . Car07g02331 Cca04g01713 Dere07g1540 . . Glsi04g1668 Gma08g02177 . . Gso8g1966 . . Lal9g0598 . . . . . . . . . Lja3g2631 Mal5g2167 . . Mibi07g1609 Mtr8g1495 . . . . . . . . . Ssu2g0505 Sto4g2471 Tpr7g1391 . Tsu08g01678 . Vifa4g00343 . . . .
Pvu11g1836 . . . Aed4g1239 . . . . . . . . . . . . Car07g02332 Cca04g01711 . . . . Gma08g02178 . . . . Lal2g0689 . Lan7g0683 . . . . . . . . Lja3g2632 Mal5g2166 Mepo1g03148 Mesa29g03547 . Mtr8g1494 . Phco9g01932 . . . . Rops3g02214 . Spst11g00449 Ssu2g0504 . Tpr7g1392 Trre15g01724 Tsu08g01677 Vian5g00512 . Vimu5g00932 . . .
Pvu11g1837 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco9g01933 . . . . . . . . . . . . . . Vimu5g00931 . . .
   
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Select Species Gene Chromosome Start End Strand
Gma Gma08g02177 Chr08 20540217 20550389 +
Gso Gso8g1966 Chr8 20160947 20171485 +
Pvu Pvu11g1828 Chr11 45080737 45084340 -
Pvu Pvu11g1829 Chr11 45088313 45089882 -
Pvu Pvu11g1830 Chr11 45106776 45110315 -
Gma Gma15g02039 Chr15 36058208 36062710 -
Mepo Mepo1g03133 Chr1 35560445 35565135 +
Mtr Mtr8g1509 Chr8 19904299 19907841 +
Tsu Tsu08g01682 Chr08 20106966 20110017 -
Pvu Pvu11g1831 Chr11 45118181 45121444 -
Cca Cca04g01714 Chr04 28892457 28896899 +
Mepo Mepo1g03135 Chr1 35571166 35575461 -
Mtr Mtr8g1508 Chr8 19889224 19893190 -
Pvu Pvu11g1832 Chr11 45126787 45131817 +
Phco Phco9g01928 Chr9 44134986 44140302 +
Pvu Pvu11g1833 Chr11 45134053 45146869 +
Phco Phco9g01929 Chr9 44145052 44167138 +
Pvu Pvu11g1834 Chr11 45151411 45155628 -
Gma Gma15g02040 Chr15 36139322 36148338 -
Mal Mal5g2168 Chr5 52469547 52472942 -
Mtr Mtr8g1497 Chr8 19653998 19657150 +
Pvu Pvu11g1835 Chr11 45178234 45191719 +
Acco Acco08g1700 Chr08 25698229 25706780 -
Accr Accr13g01651 Chr13 31158924 31169054 -
Aed Aed4g1237 Chr4 12619372 12636090 +
Alju Alju10g1670 Chr10 24301535 24312953 -
Arst Arst7g01999 Chr7 37874173 37881865 +
Bisa Bisa02g2398 Chr02 59253581 59266933 -
Car Car07g02331 Chr07 40341809 40353822 +
Cca Cca04g01713 Chr04 28853719 28864289 -
Dere Dere07g1540 Chr07 20840007 20850910 +
Glsi Glsi04g1668 Chr04 57977982 57985651 -
Gma Gma08g02177 Chr08 20540217 20550389 +
Gso Gso8g1966 Chr8 20160947 20171485 +
Lal Lal9g0598 Chr9 4023369 4031258 +
Lja Lja3g2631 Chr3 36111975 36121264 +
Mal Mal5g2167 Chr5 52394976 52404778 -
Mibi Mibi07g1609 Chr07 30566075 30577055 -
Mtr Mtr8g1495 Chr8 19618989 19627418 -
Ssu Ssu2g0505 Chr2 28921251 28924935 -
Sto Sto4g2471 Chr4 26091001 26098319 +
Tpr Tpr7g1391 Chr7 14946002 14957271 +
Tsu Tsu08g01678 Chr08 20064778 20075480 -
Vifa Vifa4g00343 Chr4 88222120 88224852 -
Pvu Pvu11g1836 Chr11 45194811 45196457 -
Aed Aed4g1239 Chr4 12649036 12650975 -
Car Car07g02332 Chr07 40361145 40362787 -
Cca Cca04g01711 Chr04 28837246 28839091 +
Gma Gma08g02178 Chr08 20559687 20560684 -
Lal Lal2g0689 Chr2 4206652 4208199 -
Lan Lan7g0683 Chr7 5721875 5723809 -
Lja Lja3g2632 Chr3 36121949 36123761 -
Mal Mal5g2166 Chr5 52391697 52393325 +
Mepo Mepo1g03148 Chr1 35769342 35771298 -
Mesa Mesa29g03547 Chr29 56549024 56550565 -
Mtr Mtr8g1494 Chr8 19616201 19618684 +
Phco Phco9g01932 Chr9 44197877 44199523 -
Rops Rops3g02214 Chr3 43940565 43942208 -
Spst Spst11g00449 Chr11 25264435 25266090 +
Ssu Ssu2g0504 Chr2 28916659 28918308 +
Tpr Tpr7g1392 Chr7 14957542 14959741 -
Trre Trre15g01724 Chr15 13775799 13777433 +
Tsu Tsu08g01677 Chr08 20062211 20063836 +
Vian Vian5g00512 Chr5 15374249 15375859 +
Vimu Vimu5g00932 Chr5 13353623 13354543 +
Pvu Pvu11g1837 Chr11 45211742 45213138 -
Phco Phco9g01933 Chr9 44216771 44217922 +
Vimu Vimu5g00931 Chr5 13290049 13292580 -