Hierarchical alignments with the P. vulgaris genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Pvu Acco Accr Adu Aed Aev Ahy_1 Ahy_2 Aip Alju Amo_1 Amo_2 Apr Arst Bach Bisa Bva Car Cca Dere Dod Enph Glsi Gma_1 Gma_2 Gso_1 Gso_2 Lal_1 Lal_2 Lal_3 Lan_1 Lan_2 Lan_3 Lapu Lasa Lele_1 Lele_2 Lele_3 Lele_4 Lja Mal Mepo Mesa Mibi Mtr Phac Phco Prci Psa Pste Pumo Rops Seca Spst Ssu Sto Tpr Trre Tsu Vian Vifa Vimu Viun Vivi Vra
Pvu11g1848 . . . . . . . . . . . . . . . . . Cca04g01703 . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco9g01950 . . . . . . Spst11g00444 Ssu2g0498 . . . . Vian5g00499 . Vimu5g00907 . . .
Pvu11g1849 . . . . . . . . . . . . . . . . . Cca04g01702 . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco9g01951 . . . . . . Spst11g00443 Ssu2g0497 . . . . Vian5g00498 . Vimu5g00905 . . .
Pvu11g1850 . . . Aed4g1251 . . . . . . . . . . . . . Cca04g01697 . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco9g01952 . . . . . . Spst11g00442 Ssu2g0496 . . . . . . . . . .
Pvu11g1851 . . . Aed4g1252 . . . . . . . . . . . . . Cca04g01696 . . . . . Gma15g02050 Gso15g1801 . . . . . . . . . . . . . . . . . . . . Phco9g01953 . . Pste1g01712 . . . Spst11g00441 Ssu2g0495 . . . . Vian5g00497 . Vimu5g00904 . . .
Pvu11g1852 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco9g01954 . . . . . . . . . . . . . . Vimu5g00903 . . .
Pvu11g1853 . . . Aed4g1260 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco9g01955 . . . . . . . . . . . . . . . . . .
Pvu11g1854 . . . . Aev10g1151 . . . . . . . . . . Bva07g01501 . Cca04g01693 . . . . . . . . . . . . . . . . . . . . Lja3g2642 Mal5g2131 . . . Mtr8g1475 . Phco9g01956 . . . . . . Spst11g00440 Ssu2g0492 . Tpr7g1433 . Tsu08g01666 Vian5g00493 Vifa4g00350 Vimu5g00902 . . .
Pvu11g1855 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Pvu11g1856 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Phco9g01957 . . . . . . . . . . . . . . . . . .
Pvu11g1857 . . . Aed4g1265 . . . . . . . Apr5g0799 . . . . . . . . . . Gma08g02161 . . Gso8g1952 . . . . . . . . . . . . . . . . . . . Phco9g01958 . . . . . . Spst11g00439 Ssu2g0484 . . . . . . Vimu5g00901 . . .
   
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Select Species Gene Chromosome Start End Strand
Pste Pste1g01712 Chr1 5261881 5274365 +
Lja Lja3g2642 Chr3 36408274 36409538 +
Pvu Pvu11g1848 Chr11 45329464 45333707 +
Cca Cca04g01703 Chr04 28322500 28323632 -
Phco Phco9g01950 Chr9 44371278 44371694 +
Spst Spst11g00444 Chr11 25127904 25128320 -
Ssu Ssu2g0498 Chr2 28625597 28626013 -
Vian Vian5g00499 Chr5 14482007 14482423 -
Vimu Vimu5g00907 Chr5 12530732 12535094 -
Pvu Pvu11g1849 Chr11 45336065 45339603 +
Cca Cca04g01702 Chr04 28302369 28319393 -
Phco Phco9g01951 Chr9 44373131 44376277 +
Spst Spst11g00443 Chr11 25120725 25125316 -
Ssu Ssu2g0497 Chr2 28617384 28622282 -
Vian Vian5g00498 Chr5 14475969 14479535 -
Vimu Vimu5g00905 Chr5 12517114 12525185 -
Pvu Pvu11g1850 Chr11 45340521 45340919 -
Aed Aed4g1251 Chr4 13105553 13105837 -
Cca Cca04g01697 Chr04 28218595 28219298 +
Phco Phco9g01952 Chr9 44377845 44378120 -
Spst Spst11g00442 Chr11 25119308 25119583 +
Ssu Ssu2g0496 Chr2 28595138 28595425 +
Pvu Pvu11g1851 Chr11 45342506 45345723 -
Aed Aed4g1252 Chr4 13108958 13114016 -
Cca Cca04g01696 Chr04 28211500 28216908 +
Gma Gma15g02050 Chr15 36769981 36776858 +
Gso Gso15g1801 Chr15 35684125 35688501 +
Phco Phco9g01953 Chr9 44380183 44384069 -
Pste Pste1g01712 Chr1 5261881 5274365 +
Spst Spst11g00441 Chr11 25114918 25116971 +
Ssu Ssu2g0495 Chr2 28589183 28592676 +
Vian Vian5g00497 Chr5 14455952 14457972 +
Vimu Vimu5g00904 Chr5 12505365 12513364 +
Pvu Pvu11g1852 Chr11 45346707 45347084 -
Phco Phco9g01954 Chr9 44384249 44384683 -
Vimu Vimu5g00903 Chr5 12421730 12425633 +
Pvu Pvu11g1853 Chr11 45348608 45349048 -
Aed Aed4g1260 Chr4 13346505 13347020 +
Phco Phco9g01955 Chr9 44388027 44388467 -
Pvu Pvu11g1854 Chr11 45351233 45352724 -
Aev Aev10g1151 Chr10 15267098 15268614 +
Bva Bva07g01501 Chr07 14859458 14863021 +
Cca Cca04g01693 Chr04 28110127 28111721 -
Lja Lja3g2642 Chr3 36408274 36409538 +
Mal Mal5g2131 Chr5 50437841 50439673 -
Mtr Mtr8g1475 Chr8 18983605 18985317 +
Phco Phco9g01956 Chr9 44390952 44392158 -
Spst Spst11g00440 Chr11 25099594 25100708 +
Ssu Ssu2g0492 Chr2 28465689 28467239 -
Tpr Tpr7g1433 Chr7 15674403 15675827 +
Tsu Tsu08g01666 Chr08 19888497 19890182 -
Vian Vian5g00493 Chr5 14258818 14259610 +
Vifa Vifa4g00350 Chr4 89869288 89870036 +
Vimu Vimu5g00902 Chr5 12336417 12337160 +
Pvu Pvu11g1855 Chr11 45362966 45363384 -
Pvu Pvu11g1856 Chr11 45366448 45367110 -
Phco Phco9g01957 Chr9 44393705 44394367 -
Pvu Pvu11g1857 Chr11 45373639 45374829 -
Aed Aed4g1265 Chr4 13475924 13477177 +
Apr Apr5g0799 Chr5 11513586 11514407 -
Gma Gma08g02161 Chr08 20149231 20150211 -
Gso Gso8g1952 Chr8 19778772 19779752 -
Phco Phco9g01958 Chr9 44400654 44401650 -
Spst Spst11g00439 Chr11 25095146 25095885 +
Ssu Ssu2g0484 Chr2 27972368 27973225 -
Vimu Vimu5g00901 Chr5 12286761 12287782 +