Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi1g0861 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Psa4g2871 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0862 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0863 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0864 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lja4g2735 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0865 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Psa4g2919 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0866 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0867 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0868 . . . . . Adu08g00607 Aed11g0219 . Aev05g1304 . Ahy15g1459 . Aip05g01537 . . . . . Apr7g1614 . . Arst10g01873 . . . . . . Car02g00609 . Cca06g00799 . . . Dod02g1487 . . . . . Gma02g00288 Gma01g00309 . . Gso2g0270 Gso2g0270 . . . . . . . . . . . . . . Lapu2g01566 . . . . . . . . . . . Lja2g1000 . Mal6g1681 . . . . . . . Mtr5g1434 . Phac2g01112 Phac9g00850 Phco4g01473 Phco7g01234 . . Psa2g2462 . Pste1g02121 . . . . . Pumo8g01194 . Pvu2g0757 Pvu9g1278 Rops1g00880 . . . Spst2g01443 Spst9g01279 Ssu2g1753 . . . Tpr2g1766 . . . . . Vian10g01152 . Vifa1g04728 . Vimu7g03748 Vimu10g02166 . . . . . .
Vvi1g0869 . . . . . . . . . . . . . . . . . . . . . . . . . . Bva08g01295 . . . . . . . . . . . . . Gma02g00287 . . . Gso2g0269 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Psa2g2464 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi1g0870 . . . . . Adu08g00609 Aed11g0220 . . . . . . . . . . . Apr7g1611 . . . . . . Bisa09g1662 Bva08g01293 . . . Cca06g00798 . . Dere04g1024 . . . Enph1g1693 . Glsi08g1152 . Gma01g00310 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mal6g1682 . . . . . . . Mtr5g1435 . . . . Phco7g01232 . . Psa2g2466 . . Pste2g03044 . . . . . Pumo10g01232 . Pvu9g1276 . Rops10g01883 . . . . . . . . Tpr2g1767 . . . Tsu05g01522 . . . . Vifa2g01768 . Vimu10g02172 . Viun9g02413 . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Psa Psa4g2919 Chr4 234283296 234286319 +
Vvi Vvi1g0861 Chr1 9173011 9173256 +
Psa Psa4g2871 Chr4 229331806 229339887 +
Vvi Vvi1g0862 Chr1 9183269 9183367 +
Vvi Vvi1g0863 Chr1 9186135 9186690 -
Vvi Vvi1g0864 Chr1 9187495 9187740 -
Lja Lja4g2735 Chr4 42851528 42853601 +
Vvi Vvi1g0865 Chr1 9205755 9206405 -
Psa Psa4g2919 Chr4 234283296 234286319 +
Vvi Vvi1g0866 Chr1 9212767 9215676 -
Vvi Vvi1g0867 Chr1 9240779 9241003 +
Vvi Vvi1g0868 Chr1 9242360 9243555 +
Adu Adu08g00607 Chr08 10929656 10933288 -
Aed Aed11g0219 Chr11 1820628 1829470 +
Aev Aev05g1304 Chr05 9249368 9254806 +
Ahy Ahy15g1459 Chr15 27280356 27292435 +
Aip Aip05g01537 Chr05 26170014 26185777 +
Apr Apr7g1614 Chr7 23277950 23280551 -
Arst Arst10g01873 Chr10 59750489 59757639 +
Car Car02g00609 Chr02 7709134 7714954 +
Cca Cca06g00799 Chr06 20851210 20855850 -
Dod Dod02g1487 Chr02 17864641 17868334 +
Gma Gma02g00288 Chr02 3015117 3018261 -
Gma Gma01g00309 Chr01 3614209 3620541 +
Gso Gso2g0270 Chr2 2917491 2920947 -
Gso Gso2g0270 Chr2 2917491 2920947 -
Lapu Lapu2g01566 Chr2 29107660 29110829 -
Lja Lja2g1000 Chr2 9435996 9438421 +
Mal Mal6g1681 Chr6 31642576 31645817 +
Mtr Mtr5g1434 Chr5 15100580 15104174 +
Phac Phac2g01112 Chr2 7520039 7525458 +
Phac Phac9g00850 Chr9 6387431 6392057 +
Phco Phco4g01473 Chr4 13304063 13307183 +
Phco Phco7g01234 Chr7 10911858 10915461 +
Psa Psa2g2462 Chr2 282340231 282341177 +
Pste Pste1g02121 Chr1 6713695 6722073 -
Pumo Pumo8g01194 Chr8 43247767 43251744 -
Pvu Pvu2g0757 Chr2 10517923 10520825 +
Pvu Pvu9g1278 Chr9 18438400 18439971 +
Rops Rops1g00880 Chr1 21289711 21292760 +
Spst Spst2g01443 Chr2 13228830 13235807 +
Spst Spst9g01279 Chr9 12252773 12254936 +
Ssu Ssu2g1753 Chr2 67806702 67812302 -
Tpr Tpr2g1766 Chr2 20928478 20934817 +
Vian Vian10g01152 Chr10 18846918 18848024 -
Vifa Vifa1g04728 Chr1 740220181 740229363 +
Vimu Vimu7g03748 Chr7 32931232 32936009 +
Vimu Vimu10g02166 Chr10 31836549 31839775 -
Vvi Vvi1g0869 Chr1 9257531 9258121 +
Bva Bva08g01295 Chr08 6744574 6747061 -
Gma Gma02g00287 Chr02 3001030 3004707 -
Gso Gso2g0269 Chr2 2905435 2908969 -
Psa Psa2g2464 Chr2 282498079 282517719 +
Vvi Vvi1g0870 Chr1 9284609 9285629 +
Adu Adu08g00609 Chr08 10970649 10975121 -
Aed Aed11g0220 Chr11 1830269 1833087 +
Apr Apr7g1611 Chr7 23251837 23255390 -
Bisa Bisa09g1662 Chr09 24768643 24772553 +
Bva Bva08g01293 Chr08 6740976 6743091 -
Cca Cca06g00798 Chr06 20841842 20844963 -
Dere Dere04g1024 Chr04 10948996 10951807 +
Enph Enph1g1693 Chr1 42121314 42124489 +
Glsi Glsi08g1152 Chr08 8422158 8423829 -
Gma Gma01g00310 Chr01 3623261 3626978 +
Mal Mal6g1682 Chr6 31773917 31782854 +
Mtr Mtr5g1435 Chr5 15112400 15116837 +
Phco Phco7g01232 Chr7 10885614 10888519 +
Psa Psa2g2466 Chr2 282543980 282574771 +
Pste Pste2g03044 Chr2 30419009 30423650 +
Pumo Pumo10g01232 Chr10 16165713 16169882 +
Pvu Pvu9g1276 Chr9 18385542 18388860 +
Rops Rops10g01883 Chr10 34851357 34855377 +
Tpr Tpr2g1767 Chr2 20938519 20941448 +
Tsu Tsu05g01522 Chr05 14747294 14753415 +
Vifa Vifa2g01768 Chr2 455690198 455691732 -
Vimu Vimu10g02172 Chr10 31891632 31892282 -
Viun Viun9g02413 Chr9 33571297 33575148 -
Vifa Vifa1g04728 Chr1 740220181 740229363 +