Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g0865 ATGGCTGCCTGCATGACCTTAGCATTTTTGAATTGTGGACAACAGATTCATGGGAGGATTATTCGAAGAGGCCTTGATGGGAATTTGGCCTTGTCTAATGTCCTTATAGACATGTATTCCAAATGTGGAAATATTGTTTATTCACACCAAGTTTTTGGGGGTATGTCTCATAGAGATTTGGTTTCTTGGACTACCATGATGATTGGGTATGGGACTCATGGTCATGCTGGACTTGTAGATGAAGGCTTGAGATATTTTAAATTAATGGTGGGTGATTATAACATTAGTCTAGACCAGGAGATTTATGGGTGTGAAGTGGATTTGCTAGGACGTGTTGGGAAAGTTGAGGAAGCTTATGAACTCATAGAGAGCATGCCATTCAAGACTGATGAGTGCGTTTGGGGGCCATTTCTTGGAGCTTGTAAAGCACACAGGTTTCCCAATTCCAGAAAATTAGCTGCTCACAGGATATTGGATTTGAGGCCTAATATGGCAGGGACTTATGTGATGCTATCAAATATATATGCAGTTGATGGTAAGTGGGGGAGTTTGTAA 555 0.4108 MAACMTLAFLNCGQQIHGRIIRRGLDGNLALSNVLIDMYSKCGNIVYSHQVFGGMSHRDLVSWTTMMIGYGTHGHAGLVDEGLRYFKLMVGDYNISLDQEIYGCEVDLLGRVGKVEEAYELIESMPFKTDECVWGPFLGACKAHRFPNSRKLAAHRILDLRPNMAGTYVMLSNIYAVDGKWGSL* 185
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g0865 184 Gene3D Tetratricopeptide repeat domain 1 183 IPR011990 GO:0005515
Vvi1g0865 184 FunFam Uncharacterized protein 68 183 - -
Vvi1g0865 184 Pfam PPR repeat 33 57 IPR002885 -
Vvi1g0865 184 Pfam PPR repeat 107 125 IPR002885 -
Vvi1g0865 184 Pfam PPR repeat 61 90 IPR002885 -
Vvi1g0865 184 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 2 76 IPR046960 GO:0003723|GO:0009451
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g0865 Vvi-Chr1 9205755 9206405 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g0865 3 69 Glycoside Hydrolase AT3G49170 31.343 1.86e-06 45.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g0865 - - vri:117930718 333.569