Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2919 ATGTTACCTTTTCATAAGCTATCTCACCACATTTCAGAATTACAAGCATTGGTTTCCTCATTCCACAAATCAATAACATCACTACAAAACCCACTTCTTCCTTTGGAACTTCTAGCAAAAGCACTAGACCAAAACCCAGACATCAAAGCCTTGAAAAATCTCCACTCCAAGATTTTTCATCTCAATTCACATCAAAATCCATCTCTAGGTATCAAACTCATGAGGGCATATGCCGCTTGTGGAGAACCTGCGTTGACACGCAAGGTGTTTGATGAAATGTGTGAGAGGAATGTTATTTTCTACAATGTCATGATTAGAAGTTACGTGAATAACCACCAGTACAATGATGGGTTGTTAGTTTTTAAGGACATGGTTAATGGAGGGTTTAGACCTGATAACTATACATACCCTTGTGTTCTTAAGGCTTGCTCTTGCTCTGACAGTTTGAGCTATGGGTTGCTGATTCATGGAGCTGTGTTGAAGGTTCGGATGGATTTGAATTTGTTTGTTGGTAACGGTCTTATTGCTATGTATGGAAAATGTGGATGCTTGGTTGAGGCGCGGCGTGTGTTTGATGAAATGCTGTGTAGAGATGTTGTTTCGTGGAACTCGATGGTTGCGGGGTATGCACAAAACATATTGTTTGATAACGCGTTGGAGATTTGTAGGGAAATGGAGGATTCGGGACAAAGACCGGATGGAGGTACGATGGCTAGTCTCATGCCAGCTGTAGCCAACACTTCACCGGAGAATGTTTTGTATGTTGAGAAGATGTTTGTGAATTTGGAAAGGAAGAATTTGGTATCGTGGAATGTGATGATAAGAGTTTATATGAAAAATTCCATGCCCAGAAATGCTGTGGATTTGTATTTGCAAATGGAGAAAAATGGCATGGAACCGGATGCAATCACATATGCTAGTGTTCTTCCAGCATGTGGGGATCTTTCGGCATTGTTGTTGGGAAGGAGGATTCATGAATATGTTGAGAGGAAGAAATTACGTCCAAATTTGCTACTGGAGAATTCTTTGATCGACATGTACGCAAGGTGCGGATGTTTAGAAGATGCAAAAAGAGTGTTTGACAGTATGAAGTTCCGTGATGTTGCATCATGGACTTCATTGATATCTTCCTATGGTATGACTGGGCAAGGATGTAATGCTGTGGAACTCTTCACAGAAATGCTGAATTCTGGCCAAACTCCAGATTCTATTGCATTCGTTGCAATTCTCTCGGCTTGTAGTCATTCAGGATTATTGGATGAAGGGAAGTTTTACTTTAAACAGATGACAAATGATTTTAGAATAACACCAAGAATCGAACACTATGCTTGTTTGGTTGATCTATTAGGACGTGCCGGCCGTGTAGACGAGGCCTATAATTTTATCAAACAAATGCCAATTGAGCCAAACGAAAGAGTTTGGGGGACACTTCTTAGCTCTTGCAGGGTATATTCAAACATGGATATTGGACTTTTAGTAGCTGACCACTTACTTCAATTAGCTCCTGAGCAATCCGGTTACTATGTTTTGTTATCGAATATTTATGCAAAGGCTGGTAGATGGAAAGAAGTAACGGATATCCGATTAGTAATGAAGAGAAGAAAAATTCGGAAAACTCCCGGCATCAGTAATGTTGAGCTAAACAATCAAGTTCATACATTTCTTGCGGGCGACACATCACATCCGCAGTCAAAGGAAATATATGAAGAGCTAAGTGTGCTGGTGGGGAAGATGAAAGAGTTAGGATATGTACCTGAGACTGATTCAGCACTTCATGATGTGGAGGAGGAGGATAAGGAAGGCCATCTAGCTGTTCACAGTGAAAAGTTAGCTATTGTGTTTGCTCTTTTGAATACACAAGAGTCTCAAATTAGAATTACCAAAAACCTTCGTGTTTGTGGAGATTGTCACATTGCTGCAAAGTTAATCTCCAAAATAGTTGAACGTGAAATTGTTGTTAGAGATACTAATAGATTCCACCATTTTAAGGATGGTGTTTGCTCTTGTGGTGATTATTGGTGA 2022 0.4011 MLPFHKLSHHISELQALVSSFHKSITSLQNPLLPLELLAKALDQNPDIKALKNLHSKIFHLNSHQNPSLGIKLMRAYAACGEPALTRKVFDEMCERNVIFYNVMIRSYVNNHQYNDGLLVFKDMVNGGFRPDNYTYPCVLKACSCSDSLSYGLLIHGAVLKVRMDLNLFVGNGLIAMYGKCGCLVEARRVFDEMLCRDVVSWNSMVAGYAQNILFDNALEICREMEDSGQRPDGGTMASLMPAVANTSPENVLYVEKMFVNLERKNLVSWNVMIRVYMKNSMPRNAVDLYLQMEKNGMEPDAITYASVLPACGDLSALLLGRRIHEYVERKKLRPNLLLENSLIDMYARCGCLEDAKRVFDSMKFRDVASWTSLISSYGMTGQGCNAVELFTEMLNSGQTPDSIAFVAILSACSHSGLLDEGKFYFKQMTNDFRITPRIEHYACLVDLLGRAGRVDEAYNFIKQMPIEPNERVWGTLLSSCRVYSNMDIGLLVADHLLQLAPEQSGYYVLLSNIYAKAGRWKEVTDIRLVMKRRKIRKTPGISNVELNNQVHTFLAGDTSHPQSKEIYEELSVLVGKMKELGYVPETDSALHDVEEEDKEGHLAVHSEKLAIVFALLNTQESQIRITKNLRVCGDCHIAAKLISKIVEREIVVRDTNRFHHFKDGVCSCGDYW* 674
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2919 673 Pfam PPR repeat family 265 312 IPR002885 -
Psa4g2919 673 Pfam PPR repeat family 96 143 IPR002885 -
Psa4g2919 673 Pfam E motif 484 546 IPR046848 -
Psa4g2919 673 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 336 366 IPR002885 -
Psa4g2919 673 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 97 131 IPR002885 -
Psa4g2919 673 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN-RELATED 19 666 - -
Psa4g2919 673 TIGRFAM PPR: pentatricopeptide repeat domain 200 233 IPR002885 -
Psa4g2919 673 TIGRFAM PPR: pentatricopeptide repeat domain 341 368 IPR002885 -
Psa4g2919 673 TIGRFAM PPR: pentatricopeptide repeat domain 268 302 IPR002885 -
Psa4g2919 673 TIGRFAM PPR: pentatricopeptide repeat domain 101 132 IPR002885 -
Psa4g2919 673 TIGRFAM PPR: pentatricopeptide repeat domain 172 200 IPR002885 -
Psa4g2919 673 Pfam E+ motif 551 577 IPR046849 -
Psa4g2919 673 Pfam DYW family of nucleic acid deaminases 582 673 IPR032867 GO:0008270
Psa4g2919 673 PANTHER PENTATRICOPEPTIDE REPEAT-CONTAINING PROTEIN 19 666 - -
Psa4g2919 673 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 266 300 IPR002885 -
Psa4g2919 673 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 198 232 IPR002885 -
Psa4g2919 673 ProSiteProfiles Pentatricopeptide (PPR) repeat profile. 367 401 IPR002885 -
Psa4g2919 673 Gene3D Tetratricopeptide repeat domain 341 572 IPR011990 GO:0005515
Psa4g2919 673 Gene3D Tetratricopeptide repeat domain 252 318 IPR011990 GO:0005515
Psa4g2919 673 Gene3D Tetratricopeptide repeat domain 159 251 IPR011990 GO:0005515
Psa4g2919 673 Gene3D Tetratricopeptide repeat domain 10 158 IPR011990 GO:0005515
Psa4g2919 673 Pfam PPR repeat 341 366 IPR002885 -
Psa4g2919 673 Pfam PPR repeat 370 398 IPR002885 -
Psa4g2919 673 Pfam PPR repeat 200 229 IPR002885 -
Psa4g2919 673 Pfam PPR repeat 406 430 IPR002885 -
Psa4g2919 673 Pfam PPR repeat 172 198 IPR002885 -
Psa4g2919 673 Pfam PPR repeat 442 465 IPR002885 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2919 Psa-Chr4 234283296 234286319 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Psa4g2919 88 673 Glycoside Hydrolase AT3G49170 39.110 4.51e-143 436
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2919 - - gmx:100787841 1110.52
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g2919 4 234283296 234286319 Psa4g2919 4 234283296 234286319 ECH