Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa4g2871 ATGTTGTCCAAATTAGCCAAACGCGCTTCCTCAAAAAAGTTCAACTTATCCTCCTCACAATCCATCTCAATTTCACGTTCTTCTACTTCACACAGATTTTCTCACCATAACAATTTGCCCGAGAAAATCTCGCCCCAAAGGAACCCGTTTTTGTGTTTCAGTCAAGTTGGTATTTTTACTTCAGCAAACAAACTGGGTCGATCTGAATTTACGTTTTCTGAACACCCTTTTAGTTTTTCTTCAACGATATTGAATCATATTAGAAGTTACGGTAGTGTTGCTGAAGCTATCGAATCGACTGATACAGAAGAAGATGATTGTTCAGGTTCAGGTTCAGGTTCAGAAGAAGTTCAGGAATTGTTAGAACAAATGGTGAAAGAAGAGAAAGAAGAGAAGAAAAAGCCTCTAGAGATGAAAAAGAACAAGAACAATAGTTACAAGTATAAAATGCTTAGGAGGAGACAGGTGAAGATTGAGACTGAGGCATGGGAGGAAGCGGCGAGAGAGTATCAGGAATTGTTGGAAGACATGCGCGAACAGAAGCTATCGCCGAATTTGCCTTACATGAAGTCATTGTTTCTCGGTTGGTTTGAGCCTTTGAAGAATGCGATTGTGGCTGATCAAGAGCTTTGTAAAGATAGTAAGACTAGGTTGAGTCATTCGCCTTTTTTCAATGAGTTGCCTGCTGATATGATGGCTGTTATCACTATGCATAAGTTGATGGGGCTGTTGATGACTAATAGTAATGGGGTTGGTAGTGCTAGAGTCATTCAAGCTGCTTGTCAAATAGGTGAAGCCATTGAACATGAGGGTAGGATATACCGATTTATGGAAAAGTCAAAGGCGAAGAAAACAGCCACTGACAAGTCTGATAATGAATCTGTTCCCGAACCTGTAAAAAGTGACAACCTGACAGCGGAAGAAAAAGAAAAACTTGATAAAGAGGAGAAAAGAATTAGGAAAAAAGTTGCTAGTTTAATAAAAAAGCAGAAGAAGCAACAAGCAATGGGGATAGTTCGGGGAAGAGATCAAGCAAAACCTTGGGGACAGGAAGCTCAAGTAAAGGTTGGCTCTCGTTTAATGCAACTGTTAATAGAAACAGCCTACTTACAACCACCTGCCAATCAATTCGGAGATGGTGGTCCTCCAGATATTTACCCCGCATTTAAGCATACCCTCAAGACAATTTCTGGTGATTCAAGCAACGGAAGTAGGAGATATGGCGTTATTGAATGTGATCCTATGATACAGAAGGGCCTTGAAAAGACTGCCAGGCACATGGTTATCCCCTACATGCCAATGTTGGTTCCACCGAATCTCTGGACAGGGTATGACAAAGGAGCATACTTGTTTTTGCCGTCATACGTAATGAGAATACATGGAGCAAAGCAGCAACGTGAAGCTGTAAAAAGGGCTCCCAAGAATCAACTTGACCCTATTTTTGAGGCACTTAACACTCTCGGTGATACCAAATGGAGGGTAAACAAAAGTGTACTCGGCGTGATAGATCAAATATGGGCTAACGGAGGCCGTCTGGCTGACTTGGTGGATCGTGATGATCTGCCCCTCCCAGAGGAACCAGACACCGAAGATGAAGCAGAAATCCGAAAATGGAAGTGGAAAGTTAAAGCCGTCAAAAAAGATAATAATGAGAGACATTCACAGCGATGTGATATAGAACTTAAACTGGCTGTTGCGCGAAAGATGAAAGAAGAAGAAGGCTTCTACTATCCTCACAATCTTGATTTCCGAGGGCGTGCTTATCCAATGCACCCATATTTGAACCATCTTGGTTCTGATCTATGTCGAGGCATACTTGAGTTTGCAGAGGGACGCCCTCTAGGGAAATCAGGCTTACAATGGTTGAAAATACATCTGGCGAATTTGTATGCTGGTGGTGTGGACAAGTTAAGTTATGATGGTCGAATAGCATTTACTGAGGGCCACCTGGATGATATTTTTGATTCCGCAGACAGGCCTCTTGAAGGAAAGCGGTGGTGGTTGCAAGCAGAGGATCCTTTTCAGTGCTTGGCAGCATGTATCAATCTTTCTGAAGCATTGAGAAGCCCTACTCCCGAGTCTACCCTTTCTCATATGCCTGTACATCAGGATGGTTCATGCAATGGCTTACAACACTACGCAGCACTTGGGAGGGACAAGTTGGGAGCTGCTGCAGTCAATCTTGTTGGTGGAGACCAGCCTGCTGATGTTTACTCGGGAATTGCAGCCAGAGTGCTTGAAATCATGAAAACCGATGCACTGAAAGATCCCAAAACTTTTCCTCATGCATTGCATGCTAGGCGTTTGATCAGCCAGGTGGACCGAAAGTTGGTGAAGCAGACAGTGATGACGTCGGTGTATGGAGTGACTTATGTTGGGGCCCGGGACCAAATTAAGAGAAGGCTTAAAGAGCGCTGTGCGATTGAGGATGATTCAGAGCTGTTTGCTGCTGCTTGCTATGCTGCAAAAACCACTCTCACCGCCTTAGAAGAGATGTTCGAGGCTGCAAGAAGTATTATGAATTGGCTAGGTGAATGTGCAAAGGTGATAGCTTGCACGAATCAAGCAGTGCGATGGGTTACTCCCCTTGGGCTACCTGTAGTACAACCTTACCGAGAAATAGGGAGACATCTGATCAAGACATCGCTTCAGGTATTGACATTACAGCGGGAGACGGACAAGGTCATGGTAAAAAGGCAGAGAACAGCTTTCCCTCCAAATTTTGTTCATTCTCTTGATGGTTCTCATATGATGATGACGGCCGTAGCTTGTAAACAAGCAGGGATGAACTTTGCAGGGGTTCATGACTCTTATTGGACACATGCGTGCGATGTTGATGAAATGAACAGGATCCTGAGGGAAAAGTTTGTTGAACTCTACGATGCTCCGATCTTAGAAAATTTGTTGGAGAATTTCGAAAAGACTTTTCCCACATTGAAGTTTCCTCCTTTACCGGAACGAGGAGACTTCGATCTTCAAGAAGTTTTGAAGTCTCCCTATTTCTTCAACTAG 3012 0.4353 MLSKLAKRASSKKFNLSSSQSISISRSSTSHRFSHHNNLPEKISPQRNPFLCFSQVGIFTSANKLGRSEFTFSEHPFSFSSTILNHIRSYGSVAEAIESTDTEEDDCSGSGSGSEEVQELLEQMVKEEKEEKKKPLEMKKNKNNSYKYKMLRRRQVKIETEAWEEAAREYQELLEDMREQKLSPNLPYMKSLFLGWFEPLKNAIVADQELCKDSKTRLSHSPFFNELPADMMAVITMHKLMGLLMTNSNGVGSARVIQAACQIGEAIEHEGRIYRFMEKSKAKKTATDKSDNESVPEPVKSDNLTAEEKEKLDKEEKRIRKKVASLIKKQKKQQAMGIVRGRDQAKPWGQEAQVKVGSRLMQLLIETAYLQPPANQFGDGGPPDIYPAFKHTLKTISGDSSNGSRRYGVIECDPMIQKGLEKTARHMVIPYMPMLVPPNLWTGYDKGAYLFLPSYVMRIHGAKQQREAVKRAPKNQLDPIFEALNTLGDTKWRVNKSVLGVIDQIWANGGRLADLVDRDDLPLPEEPDTEDEAEIRKWKWKVKAVKKDNNERHSQRCDIELKLAVARKMKEEEGFYYPHNLDFRGRAYPMHPYLNHLGSDLCRGILEFAEGRPLGKSGLQWLKIHLANLYAGGVDKLSYDGRIAFTEGHLDDIFDSADRPLEGKRWWLQAEDPFQCLAACINLSEALRSPTPESTLSHMPVHQDGSCNGLQHYAALGRDKLGAAAVNLVGGDQPADVYSGIAARVLEIMKTDALKDPKTFPHALHARRLISQVDRKLVKQTVMTSVYGVTYVGARDQIKRRLKERCAIEDDSELFAAACYAAKTTLTALEEMFEAARSIMNWLGECAKVIACTNQAVRWVTPLGLPVVQPYREIGRHLIKTSLQVLTLQRETDKVMVKRQRTAFPPNFVHSLDGSHMMMTAVACKQAGMNFAGVHDSYWTHACDVDEMNRILREKFVELYDAPILENLLENFEKTFPTLKFPPLPERGDFDLQEVLKSPYFFN* 1004
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa4g2871 1003 PANTHER DNA-DIRECTED RNA POLYMERASE 11 1003 - -
Psa4g2871 1003 Pfam DNA-directed RNA polymerase N-terminal 154 488 IPR029262 -
Psa4g2871 1003 Gene3D - 612 690 - -
Psa4g2871 1003 Gene3D - 136 488 IPR037159 -
Psa4g2871 1003 Coils Coil 114 134 - -
Psa4g2871 1003 ProSitePatterns Bacteriophage-type RNA polymerase family active site signature 2. 773 787 IPR002092 GO:0003677|GO:0003899|GO:0006351
Psa4g2871 1003 PANTHER DNA-DIRECTED RNA POLYMERASE, MITOCHONDRIAL 11 1003 IPR002092 GO:0003677|GO:0003899|GO:0006351
Psa4g2871 1003 Pfam DNA-dependent RNA polymerase 612 1003 IPR002092 GO:0003677|GO:0003899|GO:0006351
Psa4g2871 1003 SMART RPOL_N_2 153 489 IPR029262 -
Psa4g2871 1003 Gene3D - 490 572 IPR024075 GO:0003899
Psa4g2871 1003 Coils Coil 160 180 - -
Psa4g2871 1003 SUPERFAMILY DNA/RNA polymerases 141 1003 IPR043502 -
Psa4g2871 1003 Coils Coil 309 329 - -
Psa4g2871 1003 MobiDBLite consensus disorder prediction 283 318 - -
Psa4g2871 1003 ProSitePatterns Bacteriophage-type RNA polymerase family active site signature 1. 700 711 IPR002092 GO:0003677|GO:0003899|GO:0006351
Psa4g2871 1003 Gene3D - 721 910 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa4g2871 Psa-Chr4 229331806 229339887 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa4g2871 K10908 - gmx:100814762 1476.84
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa4g2871 4 229331806 229339887 Psa4g2871 4 229331806 229339887 ECH