Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
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Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi3g0293 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g0294 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g0295 . . . . . Adu03g00779 . . Aev04g3415 . Ahy13g0772 . Aip03g00812 . . . Amo13g0814 . . . . Arst3g01002 . . . . . Bva14g02387 Car06g02110 . Cca04g00240 . . . Dod03g3222 . . . . . . . . . . . . . Lal1g0101 . . . . . Lan13g0120 . . . . . . . . . . . . . . . . . . . Mal7g2631 . . Mepo2g02597 . Mesa13g02411 . . Mtr4g2172 . . . . Phco9g00298 . . . . . . . . . . . . . Pvu11g0255 . . . . . Spst2g02751 Ssu3g3069 . Sto2g1448 . Tpr3g2414 . . Trre7g02444 Tsu02g02503 . . . . . . Vimu5g02593 . . . Vivi5g03126 Vra2g0247 .
Vvi3g0296 . . . . . . . . . . . . . . . . . . . . . . . . . . . Bva14g02388 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto2g1450 . . . . . . . . . . . . . . . . . . .
Vvi3g0297 . . . . . Adu03g00778 . . . . . . . . . . . . . . . Arst3g01001 . . . . . . Car06g02111 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Lapu11g00941 . Lasa7g02421 . . . . . . . . . . . . . . . . . . . . . . . Phco9g00299 . . . . . Pste1g01026 . . . . . Pumo11g02054 . Pvu11g0256 . Rops3g00317 . Seca6g00511 . Spst2g02750 . . . . . . . . . . . Vian5g01670 . Vifa6g01399 . Vimu5g02592 . Viun11g02709 . . . .
Vvi3g0298 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g0299 . . . . . . . . Aev04g3569 . Ahy13g0999 . Aip03g01096 . . . . . . . . . . . . . . . . . . . . . Dod03g3363 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g0300 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi3g0301 . . . . . . . . Aev04g3568 . Ahy13g0998 . Aip03g01095 . . . Amo13g1299 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Mal7g2859 . . . . . . . Mtr4g2349 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Tpr3g2591 . . . Tsu02g02753 . . . . . . . . . . . . .
Vvi3g0302 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Psa7g4098 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
   
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DecoBrowse

Select Species Gene Chromosome Start End Strand
Mal Mal7g2631 Chr7 88389590 88394784 -
Mtr Mtr4g2172 Chr4 35297985 35303262 -
Tpr Tpr3g2414 Chr3 22969938 22974303 -
Tsu Tsu02g02503 Chr02 25760681 25765039 -
Aev Aev04g3415 Chr04 32756271 32757008 -
Ahy Ahy13g0772 Chr13 8083727 8086735 -
Aip Aip03g00812 Chr03 7859450 7861615 -
Amo Amo13g0814 Chr13 10123593 10128339 -
Dod Dod03g3222 Chr03 64812194 64812952 -
Vvi Vvi3g0293 Chr3 2501790 2505639 +
Vvi Vvi3g0294 Chr3 2508683 2510472 +
Vvi Vvi3g0295 Chr3 2513584 2514003 +
Adu Adu03g00779 Chr03 7377403 7377960 -
Aev Aev04g3415 Chr04 32756271 32757008 -
Ahy Ahy13g0772 Chr13 8083727 8086735 -
Aip Aip03g00812 Chr03 7859450 7861615 -
Amo Amo13g0814 Chr13 10123593 10128339 -
Arst Arst3g01002 Chr3 7460458 7461127 -
Bva Bva14g02387 Chr14 20518260 20518715 -
Car Car06g02110 Chr06 21548365 21549030 +
Cca Cca04g00240 Chr04 2342159 2342893 +
Dod Dod03g3222 Chr03 64812194 64812952 -
Lal Lal1g0101 Chr1 691205 691630 +
Lan Lan13g0120 Chr13 710489 711126 +
Mal Mal7g2631 Chr7 88389590 88394784 -
Mepo Mepo2g02597 Chr2 35626007 35626560 -
Mesa Mesa13g02411 Chr13 28282092 28282499 +
Mtr Mtr4g2172 Chr4 35297985 35303262 -
Phco Phco9g00298 Chr9 2050615 2051085 +
Pvu Pvu11g0255 Chr11 2087638 2088487 +
Spst Spst2g02751 Chr2 27239215 27239670 -
Ssu Ssu3g3069 Chr3 86231239 86231664 -
Sto Sto2g1448 Chr2 15692518 15692961 +
Tpr Tpr3g2414 Chr3 22969938 22974303 -
Trre Trre7g02444 Chr7 20102919 20103347 +
Tsu Tsu02g02503 Chr02 25760681 25765039 -
Vimu Vimu5g02593 Chr5 36125746 36127128 -
Vivi Vivi5g03126 Chr5 120254595 120255002 -
Vra Vra2g0247 Chr2 1915862 1916284 +
Vvi Vvi3g0296 Chr3 2515009 2517155 +
Bva Bva14g02388 Chr14 20520718 20522012 -
Sto Sto2g1450 Chr2 15696082 15696447 +
Vvi Vvi3g0297 Chr3 2518613 2520744 +
Adu Adu03g00778 Chr03 7371777 7374622 -
Arst Arst3g01001 Chr3 7457175 7457642 -
Car Car06g02111 Chr06 21565662 21566344 +
Lapu Lapu11g00941 Chr11 11868765 11871344 -
Lasa Lasa7g02421 Chr7 521978822 521979256 -
Phco Phco9g00299 Chr9 2052574 2053023 +
Pste Pste1g01026 Chr1 3287035 3295511 +
Pumo Pumo11g02054 Chr11 52553645 52554116 -
Pvu Pvu11g0256 Chr11 2089888 2090340 +
Rops Rops3g00317 Chr3 4020647 4021024 +
Seca Seca6g00511 Chr6 15274419 15274871 +
Spst Spst2g02750 Chr2 27237281 27238098 -
Vian Vian5g01670 Chr5 39113181 39113636 -
Vifa Vifa6g01399 Chr6 510682553 510682987 +
Vimu Vimu5g02592 Chr5 36124425 36124874 -
Viun Viun11g02709 Chr11 39725309 39725917 -
Vvi Vvi3g0298 Chr3 2524184 2524597 +
Vvi Vvi3g0299 Chr3 2525431 2525850 -
Aev Aev04g3569 Chr04 33639267 33639680 -
Ahy Ahy13g0999 Chr13 10958686 10959174 -
Aip Aip03g01096 Chr03 10625517 10626071 -
Dod Dod03g3363 Chr03 66265474 66266110 -
Vvi Vvi3g0300 Chr3 2528421 2532361 +
Vvi Vvi3g0301 Chr3 2533266 2533712 -
Aev Aev04g3568 Chr04 33635952 33636314 -
Ahy Ahy13g0998 Chr13 10955127 10955594 -
Aip Aip03g01095 Chr03 10622619 10623135 -
Amo Amo13g1299 Chr13 16961622 16965685 +
Mal Mal7g2859 Chr7 91133625 91134032 -
Mtr Mtr4g2349 Chr4 36972206 36972613 -
Tpr Tpr3g2591 Chr3 25060361 25061186 -
Tsu Tsu02g02753 Chr02 29262598 29263430 -
Vvi Vvi3g0302 Chr3 2536233 2541489 +
Psa Psa7g4098 Chr7 335522016 335522988 +