Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0299 ATGGCAAGGGAGTGGCAGAAGGTAGCTGCCATCAGGAGGAAGAGAATTTCTCTTCCAAGAACCCATCAGGATTTGGATGCTGGCTATTGTAGTACATCGTCAGTTGCTGATAAGGGCCATTTTGTTGTCTACACAGCTGACCAACGACGATTCATGATTCCGATAGTTTATCTCAACAGCAAGATCTTCAGAGAGCTCTTTGAGATGTCTGAAGCGGAGTTTGGGCTGCCAAGTGACGGACCTATCACACTTCCTTGTGACTCATTCTTCATGGAGTACATCATCTTTTTGGTCCAGAGAGGTGTAGCTAAAGATCTGGAGAAAGCTTTGCTTACATCAGTTGCTTACACTCAGTCCTCATCTTCTTTCTTTTCCCACCAAGAACAGATGAACTCGAGATTACTTGTTTGTAGTTACTGA 420 0.4429 MAREWQKVAAIRRKRISLPRTHQDLDAGYCSTSSVADKGHFVVYTADQRRFMIPIVYLNSKIFRELFEMSEAEFGLPSDGPITLPCDSFFMEYIIFLVQRGVAKDLEKALLTSVAYTQSSSSFFSHQEQMNSRLLVCSY* 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0299 139 PANTHER AUXIN-RESPONSIVE FAMILY PROTEIN 1 130 IPR003676 GO:0009733
Vvi3g0299 139 Pfam Auxin responsive protein 4 96 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0299 Vvi-Chr3 2525431 2525850 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0299 6 100 Calmodulin-binding Proteins AT4G34750 31.633 7.69e-12 57.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0299 - - vvi:100260607 263.462