LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Aip03g00812	ATGCCGGCCTTGGCTTGCTGCGTGGACGCTGCACATGCTCCTCCCGGCTACGCTCTCGCCGGGGACATATCTCTTCCTCCGCCGGTCACATTCACCGGCGCACTTCCGCTGGCGACAACAACCGACGACGCTGACACCAACACCTCCCATTGGACGCCGTCCATGTCATCCACCCTGTACAGGATCGACGGCTGGGGCGCTCCCTACTTCGCCGTCAACACCGCCGGAAACATCTCCGTCATGCCGCACGGCCTCGGAACCCTTCCCCACCAGGAGATCGATCTGTTGAAAATCGTGAAGAAAGTCTCCGATCCCAAACACTCCGGCGGCCTCGGCCTCCAGCTGCCGCTCATCGTCCGCTTCCCTGACGTACTCAAGAACCGCCTCGAGTCTCTTCAATCGGCGTTCGAGTTTGCGATCCAGGAACAGGGGTACGATGGTCATTACCAAGGTGTATACCCCGTGAAGTGCAACCAGGACAGGTTCGTTGTGGAGGACATAGTTAAATTCGGTTCACCGTTCCGGTTCGGGCTCGAAGCCGGATCCAAACCGGAGCTTCTTTTAGCCATGTCATGCCTCTGCAAGGGGAATCAAGAAGCGCTTCTTGTTTGCAACGGTTTCAAGGACAGAGAGTATATCTCTCTTGCAATTGTTGCGAGGAAGCTTGCTCTCAACACTGTTATTGTTCTTGAGCAAGAGGAAGAGCTCGATTTGGTGGTTGAGATCAGCAAAAAGCTTTGCATTCGACCGGTTATTGGTCTTCGTGCCAAGCTTAGAACCAAGCATTCTGGTCATTTCGGTTCTACTTCTGGCGAGAAAGGGAAATTTGGACTCAACACTACTCAGATTCCAACCACTGCGTTGCTTGCTGATGGTGTTGGAGAGGCTGCACAGATTTACTGTGAATTGGTTAGGCTTGGTGCCCAGATGCGTGTCATCGACATTGGTGGTGGTTTGGGAATTGATTATGATGGCACAAAGTCATGTGACTCTGATATCTCTGTTGGGTATGGTTTGGAAGAATATGCGGCCGCAGTGGTTAGCGCGGTTCAGTTTGTTTGTGACAGAAGGTCCGTGAAGCACCCTGTGATTTGCAGTGAGAGTGGAAGAGCCATTGTGTCTCATCACTCTGTTTTGATCTTTGAAGCCATTGGAGCTAGCTCTTATGGAGCTCCAACATTGTCCACAATTGGGCTTCAGTACTTGGTTGAGGGGCTTTCCGATGAAGCACGCGCCGATTACCATAGCCTCTCGGCGGCAACCATGATTGGTGACTATGAAAACTGTGTGCTTTACATGGAGCAGTTGAAACAACGCTGTGTTGAGCAGTTCAAGCAGGGTACTTTGGGAATGGAACAGCTTGCTTCTGTAGATGGCTTGTGTGAACTTGTGAGCAGTGCAATTGGGGCGAAGGATCCGGTGCGGACTTACCATGTGAACCTCTCTGTGTTCACCTCCATTCCTGATTTCTGGGGGATTGATCAGATGTTTCCAATTGTACCGGTTCACAGGCTCGATGAGAAGCCGACGGCGAAGGGGATTCTATCGGATTTGACTTGTGACAGTGATGGGAAGATTGACAGGTTCATTGGGGGAGAATCAAGTTTGCCCCTTCATGAATTGGAAGGCAATGATGGTGGCTACTATCTGGGAATGTTCTTGGGTGGGGCTTATGAGGAGGCGCTTGGAGGTCTCCATAACCTCTTTGGTGGCCCGAGCGTTGTTCGGGTGATGCAGAGGGACGGCCCACATGGCTTTGCGGTGACGCGCGCGGTCCCTGGGCCTTCCTCTGGAGACGTCCTCCGAGTGATGCAGCACGAGCCCGAGCTCATGTTCGAGACACTCAAGCACAGGGCGCAAGAGTTTGCAGCAGATGAGAATGGCCATGATGATGATGAAGATGTTGATGAGAAGAGTATGATGAATGCTGCGGCTCTTGCTGCTAGACTCGCTTTCTCATTTGATAACATGCCATATCTGGTTGCATCTTCATCTTGTGCCTTGAATGCAATGGAGAACAATGGCTTCTACTATTGTTCCAGTGATGAGTTCAGCGAAGTTGTGACTGATTCTACTTGTGCTTGA	2085	0.518	MPALACCVDAAHAPPGYALAGDISLPPPVTFTGALPLATTTDDADTNTSHWTPSMSSTLYRIDGWGAPYFAVNTAGNISVMPHGLGTLPHQEIDLLKIVKKVSDPKHSGGLGLQLPLIVRFPDVLKNRLESLQSAFEFAIQEQGYDGHYQGVYPVKCNQDRFVVEDIVKFGSPFRFGLEAGSKPELLLAMSCLCKGNQEALLVCNGFKDREYISLAIVARKLALNTVIVLEQEEELDLVVEISKKLCIRPVIGLRAKLRTKHSGHFGSTSGEKGKFGLNTTQIPTTALLADGVGEAAQIYCELVRLGAQMRVIDIGGGLGIDYDGTKSCDSDISVGYGLEEYAAAVVSAVQFVCDRRSVKHPVICSESGRAIVSHHSVLIFEAIGASSYGAPTLSTIGLQYLVEGLSDEARADYHSLSAATMIGDYENCVLYMEQLKQRCVEQFKQGTLGMEQLASVDGLCELVSSAIGAKDPVRTYHVNLSVFTSIPDFWGIDQMFPIVPVHRLDEKPTAKGILSDLTCDSDGKIDRFIGGESSLPLHELEGNDGGYYLGMFLGGAYEEALGGLHNLFGGPSVVRVMQRDGPHGFAVTRAVPGPSSGDVLRVMQHEPELMFETLKHRAQEFAADENGHDDDEDVDEKSMMNAAALAARLAFSFDNMPYLVASSSCALNAMENNGFYYCSSDEFSEVVTDSTCA	694

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Aip03g00812	694	Gene3D	Lyase, Ornithine Decarboxylase; Chain A, domain 1	56	141	IPR009006	GO:0003824
Aip03g00812	694	Gene3D	Alanine racemase	142	285	IPR029066	-
Aip03g00812	694	ProSitePatterns	Orn/DAP/Arg decarboxylases family 2 signature 2.	307	320	IPR022657	-
Aip03g00812	694	PRINTS	Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature	556	569	IPR000183	GO:0003824
Aip03g00812	694	PRINTS	Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature	177	189	IPR000183	GO:0003824
Aip03g00812	694	PRINTS	Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature	153	171	IPR000183	GO:0003824
Aip03g00812	694	PRINTS	Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature	364	383	IPR000183	GO:0003824
Aip03g00812	694	CDD	PLPDE_III_ADC	112	577	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Aip03g00812	694	Gene3D	Alanine racemase	286	375	IPR029066	-
Aip03g00812	694	SUPERFAMILY	PLP-binding barrel	121	376	IPR029066	-
Aip03g00812	694	PANTHER	ARGININE DECARBOXYLASE	1	283	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Aip03g00812	694	PANTHER	ARGININE DECARBOXYLASE	281	685	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Aip03g00812	694	PRINTS	Arginine decarboxylase signature	253	275	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Aip03g00812	694	PRINTS	Arginine decarboxylase signature	229	250	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Aip03g00812	694	PRINTS	Arginine decarboxylase signature	556	577	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Aip03g00812	694	PRINTS	Arginine decarboxylase signature	480	501	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Aip03g00812	694	PRINTS	Arginine decarboxylase signature	505	530	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Aip03g00812	694	PRINTS	Arginine decarboxylase signature	121	136	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Aip03g00812	694	PRINTS	Arginine decarboxylase signature	145	159	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Aip03g00812	694	PRINTS	Arginine decarboxylase signature	203	218	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Aip03g00812	694	PANTHER	ARGININE DECARBOXYLASE	1	283	-	-
Aip03g00812	694	PANTHER	ARGININE DECARBOXYLASE	281	685	-	-
Aip03g00812	694	PIRSF	ARGDC	280	649	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Aip03g00812	694	PIRSF	ARGDC	38	285	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Aip03g00812	694	Pfam	Pyridoxal-dependent decarboxylase, pyridoxal binding domain	288	374	IPR022644	GO:0003824
Aip03g00812	694	Pfam	Pyridoxal-dependent decarboxylase, pyridoxal binding domain	146	283	IPR022644	GO:0003824
Aip03g00812	694	ProSitePatterns	Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site.	153	171	IPR022653	-
Aip03g00812	694	Gene3D	Lyase, Ornithine Decarboxylase; Chain A, domain 1	429	590	IPR009006	GO:0003824
Aip03g00812	694	SUPERFAMILY	Alanine racemase C-terminal domain-like	462	581	IPR009006	GO:0003824

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Aip03g00812	Aip-Chr3	7859450	7861615	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Aip03g00812	K01583		-	twl:119992284	1016.14

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Aip03g00812	03	7859450	7861615	Aip03g00812	03	7859450	7861615	ECH