Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Dod03g3222 ATGCCTGCCTTGGCTTGCTGCGTAGACGCTGCACTTGCACCTCCCGGCTACGCTCTCGCCGGGGACATCTCTCTTCCGCTGCCGGTCACATTTCCCGGCGCACCTCCGGCGACCGCCGACGACGACGATAATTCCCATTGGTCGCCCTCCCTGTCCGCTAGCCTGTACAGGATCGACGGCTGGGGAGCTCCCTACTTCGCCGTTAACTCCGCCGGAAACATCGCTGTCCGGCCACATGGCCCCGGAACCCTACCTCACCAGGAGATTGATCTGCTCAAAATCGTGAAGAAGGCTTCCGATCCGAAAACCTCCGGCGGGCTCGGGCTCCAGCTACCCCTCATCGTCCGCTTCCCGGACGTTCTAAAGAACCGCCTTGAGTCCCTCCAATCGGCTTTCGAGTTCGCGGTCCAGTCTCAGGGGTATGATGGTCATTACCAGGGTGTTTTCCCCGTGAAGTCCAACCAGGACAGGTTCGTTGTGGAGGACATCGTTGAAGTCGGGTCATCCTTCCGGTTCGGACTCGAAGCCGGGTCCAAACCGGAGCTCCTTCTCGCAATGACATGTTTGTGCAAGGGAAGCCCGGAAGCGCTTCTTGTTTGCAACGGTTTCAAGGACAGAGAGTACATCTCTCTGGCTTTGTTCGCAAGGAAGCTTGCTCTGAACACCGTGATTGTTCTGGAGCAAGAAGAAGAGCTTGATTTGGTTGTTGAGACTAGCAGGAAACTCTGCATTCGTCCCCGTGATTGGTCTTCGTGCTAA 759 0.5731 MPALACCVDAALAPPGYALAGDISLPLPVTFPGAPPATADDDDNSHWSPSLSASLYRIDGWGAPYFAVNSAGNIAVRPHGPGTLPHQEIDLLKIVKKASDPKTSGGLGLQLPLIVRFPDVLKNRLESLQSAFEFAVQSQGYDGHYQGVFPVKSNQDRFVVEDIVEVGSSFRFGLEAGSKPELLLAMTCLCKGSPEALLVCNGFKDREYISLALFARKLALNTVIVLEQEEELDLVVETSRKLCIRPRDWSSC* 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Dod03g3222 252 ProSitePatterns Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site. 149 167 IPR022653 -
Dod03g3222 252 Pfam Pyridoxal-dependent decarboxylase, pyridoxal binding domain 142 239 IPR022644 GO:0003824
Dod03g3222 252 PRINTS Arginine decarboxylase signature 141 155 IPR002985 GO:0006527|GO:0008295|GO:0008792
Dod03g3222 252 PRINTS Arginine decarboxylase signature 117 132 IPR002985 GO:0006527|GO:0008295|GO:0008792
Dod03g3222 252 PRINTS Arginine decarboxylase signature 199 214 IPR002985 GO:0006527|GO:0008295|GO:0008792
Dod03g3222 252 PRINTS Arginine decarboxylase signature 225 246 IPR002985 GO:0006527|GO:0008295|GO:0008792
Dod03g3222 252 PANTHER ARGININE DECARBOXYLASE 1 246 IPR002985 GO:0006527|GO:0008295|GO:0008792
Dod03g3222 252 PANTHER ARGININE DECARBOXYLASE 1 246 - -
Dod03g3222 252 Gene3D Lyase, Ornithine Decarboxylase; Chain A, domain 1 52 137 IPR009006 GO:0003824
Dod03g3222 252 Gene3D Alanine racemase 138 249 IPR029066 -
Dod03g3222 252 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 173 185 IPR000183 GO:0003824
Dod03g3222 252 PRINTS Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature 149 167 IPR000183 GO:0003824
Dod03g3222 252 SUPERFAMILY PLP-binding barrel 117 246 IPR029066 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Dod03g3222 Dod-Chr3 64812194 64812952 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Dod03g3222 K01583 - gmx:100793552 394.815
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Dod03g3222 03 64812194 64812952 Dod03g3222 03 64812194 64812952 ECH