Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi3g0295 ATGGCAAGGAAGTGGCAGAAGATGGCTGCTATGAGGAGGAAGAGAATCTCTCTACCAAGAACAGATGAGGTTTTGGATGCTGATAGATGTAGTACATCATCAGTGGCAGATAAGGGCCATTTTGTTGTTTGCAGTGCTGACAAGAAACGCTTTGTGATTCCATTAGTGTATCTCAACAATGAAATCTTCAGAGGGCTTTTGCAAGTGTCTGAGGAGGAGTTTGGGATACAAATTACAGGCCCCATCATATTGCCATGTGATTCAGTCTTTATGGACTATATGATCTCAATCATCCAACGTGGTGTTGCAAAAGATTTGGAGAGGGCCTTGATCTTATCTATAGATTCCAGTTACTGCTCATCCTCCTCATACTTCCATCAAGAACAGAACAATGAGCAATTACTATTATGTGCATGCTGA 420 0.4167 MARKWQKMAAMRRKRISLPRTDEVLDADRCSTSSVADKGHFVVCSADKKRFVIPLVYLNNEIFRGLLQVSEEEFGIQITGPIILPCDSVFMDYMISIIQRGVAKDLERALILSIDSSYCSSSSYFHQEQNNEQLLLCAC* 140
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi3g0295 139 Pfam Auxin responsive protein 3 97 IPR003676 GO:0009733
Vvi3g0295 139 PANTHER AUXIN-RESPONSIVE FAMILY PROTEIN 1 133 IPR003676 GO:0009733
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi3g0295 Vvi-Chr3 2513584 2514003 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi3g0295 1 100 Calmodulin-binding Proteins AT4G34750 32.673 4.22e-12 58.2
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi3g0295 - - vvi:100241775 264.233