LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Amo13g0814	ATGCCGGCCTTGGCTTGCTGCGTGGACGCTGCACATGCTCCTCCCGGCTACGCTCTCGCCGGGGACATATCTCTTCCTCCGCCGGTCACATTCACCGGCGCACTTCCGCTGGCGACAACAACCGACGACGCTGACACCAACACCTCCCATTGGACGCCGTCCATGTCATCCACCCTGTACAGGATCGACGGCTGGGGCGCTCCCTACTTCGCCGTCAACACCGCCGGAAACATCTCCGTCATGCCGCACGGCCTCGGAACCCTTCCCCACCAGGAGATCGATCTGTTGAAGATCGTGAAGAAAGTCTCCGATCCCAAACACTCCGGCGGCCTCGGCCTCCAGCTGCCGCTCATCGTCCGCTTCCCTGACGTACTCAAGAACCGCCTCGAGTCTCTTCAATCGGCGTTCGAGTTTGCGATCCAGGAACAGGGGTACGATGGTCATTACCAAGGTGTATACCCCGTGAAGTGCAACCAGGACAGGTTCGTTGTGGAGGACATAGTTAAATTCGGTTCACCGTTCCGGTTCGGGCTCGAAGCCGGATCCAAACCGGAGCTTCTTTTAGCCATGTCATGCCTCTGCAAGGGGAATCAAGAAGCGCTTCTTGTTTGCAACGGTTTCAAGGACAGAGAGTATATCTCTCTTGCAATTGTTGCGAGGAAGCTTGCTCTCAACACTGTTATTGTTCTTGAGCAAGAGGAAGAGCTCGATTTGGTGGTTGAGATCAGCAAAAAGCTTTGCATTCGACCGGTTATTGGTCTTCGTGCCAAGCTTAGAACCAAGCATTCTGGTCATTTCGGTTCTACTTCTGGCGAGAAAGGGAAATTTGGACTCAACACTACTCAGGTTCTTCGTGTTGTGAAGAAGCTTGAGAATTTGGGCATGCTGGATTGCCTTCAGCTTCTGCATTTCCACATTGGTTCTCAGATTCCAACCACTGCGTTGCTTGCTGATGGTGTTGGAGAGGCTGCACAGATTTACTGTGAATTGGTTAGGCTTGGTGCCCAGATGCGTGTCATCGACATTGGTGGTGGTTTGGGAATTGATTATGATGGCACAAAGTCATGTGACTCTGATATCTCTGTTGGGTATGGTTTGGAAGAATATGCGGCCGCAGTGGTTAGCGCGGTTCAGTTTGTTTGTGACAGAAGGTCCGTGAAGCACCCTGTGATTTGCAGTGAGAGTGGAAGAGCCATTGTGTCTCATCACTCTGTTTTGATCTTTGAAGCCATTGGAGCTAGCTCTTATGGAGCTCCAACATTGTCCACAATTGGGCTTCAGTACTTGGTTGAGGGGCTTTCCGATGAAGCACGCGCCGATTACCATAGCCTCTCGGCGGCAACCATGATTGGTGACTATGAAAACTGTGTGCTTTACATGGAGCAGTTGAAACAACGCTGTGTTGAGCAGTTCAAGCAGGGTACTTTGGGAATGGAACAGCTTGCTTCTGTAGATGGCTTGTGTGAACTTGTGAGCAGTGCAATTGGGGCGAAGGATCCGGTGCGGACTTACCATGTGAACCTCTCTGTGTTCACCTCCATTCCTGATTTCTGGGGGATTGATCAGATGTTTCCAATTGTACCGGTTCACAGGCTCGATGAGAAGCCGACGGCGAAGGGGATTCTATCGGATTTGACTTGTGACAGTGATGGGAAGATTGACAGGTTCATTGGGGGAGAATCAAGTTTGCCCCTTCATGAATTGGAAGGCAATGATGGTGGCTACTATCTGGGAATGTTCTTGGGTGGGGCTTATGAGGAGGCGCTTGGAGGTCTCCATAACCTCTTTGGTGGCCCGAGCGTTGTTCGGGTGATGCAGAGGGATGGCCCACATGGCTTTGCGGTGACGCGCGCGGTCCCTGGGCCTTCCTCTGGAGACGTCCTCCGAGTGATGCAGCACGAGCCCGAGCTCATGTTCGAGACACTCAAGCACAGGGCGCAAGAGTTTGCAGCAGATGAGAATGGCCATGATGATGATGAAGATGTTGATGAGAAGAGTATGATGAATGCTGCGGCTCTTGCTGCTAGACTCGCTTTCTCATTTGATAACATGCCATATCTGGTTGCATCTTCATCTTGTGCCTTGAATGCAATGGAGAACAATGGCTTCTACTATTGTTCCAGTGATGAGTTCAGCGAAGTTGTGACTGATTCTACTTGTGCTTGA	2166	0.5157	MPALACCVDAAHAPPGYALAGDISLPPPVTFTGALPLATTTDDADTNTSHWTPSMSSTLYRIDGWGAPYFAVNTAGNISVMPHGLGTLPHQEIDLLKIVKKVSDPKHSGGLGLQLPLIVRFPDVLKNRLESLQSAFEFAIQEQGYDGHYQGVYPVKCNQDRFVVEDIVKFGSPFRFGLEAGSKPELLLAMSCLCKGNQEALLVCNGFKDREYISLAIVARKLALNTVIVLEQEEELDLVVEISKKLCIRPVIGLRAKLRTKHSGHFGSTSGEKGKFGLNTTQVLRVVKKLENLGMLDCLQLLHFHIGSQIPTTALLADGVGEAAQIYCELVRLGAQMRVIDIGGGLGIDYDGTKSCDSDISVGYGLEEYAAAVVSAVQFVCDRRSVKHPVICSESGRAIVSHHSVLIFEAIGASSYGAPTLSTIGLQYLVEGLSDEARADYHSLSAATMIGDYENCVLYMEQLKQRCVEQFKQGTLGMEQLASVDGLCELVSSAIGAKDPVRTYHVNLSVFTSIPDFWGIDQMFPIVPVHRLDEKPTAKGILSDLTCDSDGKIDRFIGGESSLPLHELEGNDGGYYLGMFLGGAYEEALGGLHNLFGGPSVVRVMQRDGPHGFAVTRAVPGPSSGDVLRVMQHEPELMFETLKHRAQEFAADENGHDDDEDVDEKSMMNAAALAARLAFSFDNMPYLVASSSCALNAMENNGFYYCSSDEFSEVVTDSTCA*	722

Annotation information

Seq ID	Length	Analysis	Description	Start	End	IPR	GO
Amo13g0814	721	Gene3D	-	420	500	-	-
Amo13g0814	721	PRINTS	Arginine decarboxylase signature	121	136	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Amo13g0814	721	PRINTS	Arginine decarboxylase signature	145	159	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Amo13g0814	721	PRINTS	Arginine decarboxylase signature	203	218	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Amo13g0814	721	PRINTS	Arginine decarboxylase signature	229	250	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Amo13g0814	721	PRINTS	Arginine decarboxylase signature	253	275	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Amo13g0814	721	PRINTS	Arginine decarboxylase signature	381	398	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Amo13g0814	721	PRINTS	Arginine decarboxylase signature	507	528	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Amo13g0814	721	PRINTS	Arginine decarboxylase signature	532	557	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Amo13g0814	721	PRINTS	Arginine decarboxylase signature	583	604	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Amo13g0814	721	PIRSF	ARGDC	38	677	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Amo13g0814	721	Pfam	Pyridoxal-dependent decarboxylase, pyridoxal binding domain	146	401	IPR022644	GO:0003824
Amo13g0814	721	CDD	PLPDE_III_ADC	112	604	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Amo13g0814	721	ProSitePatterns	Orn/DAP/Arg decarboxylases family 2 signature 2.	334	347	IPR022657	-
Amo13g0814	721	TIGRFAM	speA: arginine decarboxylase	51	687	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Amo13g0814	721	PANTHER	ARGININE DECARBOXYLASE	1	712	IPR002985	GO:0006527\|GO:0008295\|GO:0008792
Amo13g0814	721	PRINTS	Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature	153	171	IPR000183	GO:0003824
Amo13g0814	721	PRINTS	Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature	177	189	IPR000183	GO:0003824
Amo13g0814	721	PRINTS	Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature	296	309	IPR000183	GO:0003824
Amo13g0814	721	PRINTS	Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature	391	410	IPR000183	GO:0003824
Amo13g0814	721	PRINTS	Ornithine/diaminopimelate/arginine (ODA) decarboxylase family signature	583	596	IPR000183	GO:0003824
Amo13g0814	721	Gene3D	Alanine racemase	122	403	IPR029066	-
Amo13g0814	721	Gene3D	Lyase, Ornithine Decarboxylase; Chain A, domain 1	60	606	IPR009006	GO:0003824
Amo13g0814	721	SUPERFAMILY	PLP-binding barrel	121	403	IPR029066	-
Amo13g0814	721	SUPERFAMILY	Alanine racemase C-terminal domain-like	489	608	IPR009006	GO:0003824
Amo13g0814	721	PANTHER	ARGININE DECARBOXYLASE	1	712	-	-
Amo13g0814	721	ProSitePatterns	Orn/DAP/Arg decarboxylases family 2 pyridoxal-P attachment site.	153	171	IPR022653	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Amo13g0814	Amo-Chr13	10123593	10128339	Dispersed

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Amo13g0814	K01583		-	twl:119992284	1080.09

Event-related genes

Select	Gene_1	Chr_1	Start_1	End_1	Gene_2	Chr_2	Start_2	End_2	Event_name
	Amo13g0814	13	10123593	10128339	Amo13g0814	13	10123593	10128339	ECH