Hierarchical alignments with the V. vinifera genome as reference

  Inter-genomic and intra-genomic comparisons can help reveal the structural complexity of Fabaceae genomes. We used P. vulgaris as a reference, and by comparing homologous gene locus maps and Ks values between P. vulgaris and other Fabaceae, we could separate orthologous and paralogous genes produced by different polyploidization in the species genomes. We created two hierarchical lists of homologous genes using P. vulgaris as a reference.
  The relevant gene ids can be obtained from the Fabaceae blast and match under the Tools module. This link is Fabaceae blast and match.
Valid last name is required.
    
Valid last name is required.
    
Valid line number is required.
Select Download Tree Vvi Acco_1 Acco_2 Accr_1 Accr_2 Adu_1 Adu_2 Aed_1 Aed_2 Aev_1 Aev_2 Ahy_1 Ahy_2 Aip_1 Aip_2 Alju_1 Alju_2 Amo_1 Amo_2 Apr_1 Apr_2 Arst_1 Arst_2 Bach_1 Bach_2 Bisa_1 Bisa_2 Bva_1 Bva_2 Car_1 Car_2 Cca_1 Cca_2 Dere_1 Dere_2 Dod_1 Dod_2 Enph_1 Enph_2 Glsi_1 Glsi_2 Gma_1 Gma_2 Gma_3 Gma_4 Gso_1 Gso_2 Gso_3 Gso_4 Lal_1 Lal_2 Lal_3 Lal_4 Lal_5 Lal_6 Lan_1 Lan_2 Lan_3 Lan_4 Lan_5 Lan_6 Lapu_1 Lapu_2 Lasa_1 Lasa_2 Lele_1 Lele_2 Lele_3 Lele_4 Lele_5 Lele_6 Lele_7 Lele_8 Lja_1 Lja_2 Mal_1 Mal_2 Mepo_1 Mepo_2 Mesa_1 Mesa_2 Mibi_1 Mibi_2 Mtr_1 Mtr_2 Phac_1 Phac_2 Phco_1 Phco_2 Prci_1 Prci_2 Psa_1 Psa_2 Pste_1 Pste_2 Pte_1 Pte_2 Pte_3 Pte_4 Pumo_1 Pumo_2 Pvu_1 Pvu_2 Rops_1 Rops_2 Seca_1 Seca_2 Spst_1 Spst_2 Ssu_1 Ssu_2 Sto_1 Sto_2 Tpr_1 Tpr_2 Trre_1 Trre_2 Tsu_1 Tsu_2 Vian_1 Vian_2 Vifa_1 Vifa_2 Vimu_1 Vimu_2 Viun_1 Viun_2 Vivi_1 Vivi_2 Vra_1 Vra_2
Vvi18g0936 . . . . . . . . Aev08g0321 . Ahy17g2476 . Aip07g02650 . . . . . . Apr5g1547 . . . . . . . Bva10g00760 . Car05g02720 . Cca07g00415 . . . . . . . . Gma04g00339 Gma06g00326 . . Gso4g0317 Gso4g0317 . . Lal4g0113 . . . . . . . . . . . . . . . . . . . . . . . Lja1g4198 . . . . . . . . . . Mtr3g3603 . . . . . . . Psa5g1059 . . . . . . . . . . . . . . . . . . . Sto9g3588 . . . . . . . . . . . . . . . . . .
Vvi18g0937 Acco10g1675 . Accr4g01085 . Adu08g00323 . . . Aev08g0320 . Ahy17g2475 . Aip07g02649 . Alju08g1121 . . . . Apr5g1548 Arst8g00387 . Bach12g00209 . Bisa09g1911 . Bva06g02050 . . Car05g02719 . Cca07g00414 Dere04g0222 . Dod08g2126 . Enph1g1134 . Glsi08g1912 . Gma04g00338 Gma06g00325 . . Gso4g0316 Gso4g0316 . . Lal4g0112 . Lal21g0172 . Lal10g0798 . . . . . . . Lapu9g02182 . Lasa5g03664 . Lele01g0886 Lele02g0872 Lele03g0886 Lele04g0885 . . . . Lja1g4201 . . . Mepo3g07093 . Mesa9g04620 . Mibi05g1042 . . Mtr3g3602 Phac9g01646 . Phco7g00421 . Prci8g0306 . . Psa5g1060 Pste2g00952 . . . . . . . Pvu9g0641 . Rops10g01057 . Seca4g01550 . Spst9g00426 . . . Sto5g0290 Sto9g3591 . Tpr3g3424 Trre5g04526 . . Tsu07g01016 Vian4g02279 . Vifa2g03545 . Vimu10g03349 . Viun9g03528 . Vivi3g02002 . . Vra5g1539
Vvi18g0938 . . . . . . . . . . . . . . . . . . . . . . . . . . Bva06g02049 Bva10g00763 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto5g0289 Sto9g3594 . . . . . . . . . . . . . . . . . .
Vvi18g0939 . . . . . . . . . . . . . . . . . . . . . . . . . . . Bva10g00764 . . . . . . . . . . . . . . Gma16g01328 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g0940 . . . . . . . . . . . . . . . . . . . . . . . . . . . Bva10g00765 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Sto5g0287 . . . . . . . . . . . . . . . . . . .
Vvi18g0941 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g0942 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g0943 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . Gma16g01326 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g0944 . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .
Vvi18g0945 . . . . . Adu06g03242 Aed11g0170 . . Aev07g0807 . Ahy16g3591 . Aip06g03858 . . . Amo16g3907 Apr9g0461 . . Arst6g04186 . Bach3g02283 . . . Bva10g00767 Car04g03470 . Cca05g00219 . . . . . . . . . . . Gma14g00685 Gma17g02354 . . . . . . . . Lal10g0797 . . . . . . . . . . Lasa6g00142 . . . . . . . . . Lja5g3185 Mal1g5841 . . . . Mesa1g00249 . . Mtr1g0557 . . . . Phco2g00216 . . . . . Pste8g01111 . . . Pte2g01186 . Pumo9g00197 . Pvu1g0190 . Rops9g02257 . Seca8g03772 . Spst8g02103 Ssu5g0197 . Sto5g0286 . . . . Trre1g00276 Tsu01g00353 . . Vian7g00774 . Vifa3g04976 . Vimu1g03045 . Viun8g00270 . Vivi4g05692 Vra6g1901 .
   
Previous Page 2555 of 2817 Next

DecoBrowse

Select Species Gene Chromosome Start End Strand
Vvi Vvi18g0936 Chr18 9597925 9600920 +
Aev Aev08g0321 Chr08 1732166 1734957 -
Ahy Ahy17g2476 Chr17 118457415 118462354 -
Aip Aip07g02650 Chr07 109944582 109948842 -
Apr Apr5g1547 Chr5 19333011 19336909 +
Bva Bva10g00760 Chr10 6155905 6158208 +
Car Car05g02720 Chr05 72299315 72307642 -
Cca Cca07g00415 Chr07 5488198 5492133 -
Gma Gma04g00339 Chr04 2894567 2898583 -
Gma Gma06g00326 Chr06 2828432 2832414 -
Gso Gso4g0317 Chr4 2841390 2845539 -
Gso Gso4g0317 Chr4 2841390 2845539 -
Lal Lal4g0113 Chr4 692890 695489 -
Lja Lja1g4198 Chr1 53556482 53560011 +
Mtr Mtr3g3603 Chr3 49916608 49919376 -
Psa Psa5g1059 Chr5 81760925 81764229 +
Sto Sto9g3588 Chr9 34667970 34670280 +
Vvi Vvi18g0937 Chr18 9603491 9606102 -
Acco Acco10g1675 Chr10 30172826 30175109 +
Accr Accr4g01085 Chr4 10294809 10297083 -
Adu Adu08g00323 Chr08 5722745 5724531 +
Aev Aev08g0320 Chr08 1728878 1730682 +
Ahy Ahy17g2475 Chr17 118454384 118457200 +
Aip Aip07g02649 Chr07 109941220 109943906 +
Alju Alju08g1121 Chr08 8404338 8406599 -
Apr Apr5g1548 Chr5 19338310 19340599 -
Arst Arst8g00387 Chr8 5695045 5696796 +
Bach Bach12g00209 Chr12 1429801 1431801 +
Bisa Bisa09g1911 Chr09 29994255 29996585 -
Bva Bva06g02050 Chr06 13679893 13682142 +
Car Car05g02719 Chr05 72296245 72299162 +
Cca Cca07g00414 Chr07 5475229 5477791 +
Dere Dere04g0222 Chr04 2296159 2298448 +
Dod Dod08g2126 Chr08 48901627 48904445 -
Enph Enph1g1134 Chr1 37484106 37487597 +
Glsi Glsi08g1912 Chr08 13543776 13546030 -
Gma Gma04g00338 Chr04 2888813 2890523 +
Gma Gma06g00325 Chr06 2824085 2826656 +
Gso Gso4g0316 Chr4 2835381 2837871 +
Gso Gso4g0316 Chr4 2835381 2837871 +
Lal Lal4g0112 Chr4 690686 694046 +
Lal Lal21g0172 Chr21 1136348 1138848 +
Lal Lal10g0798 Chr10 15704691 15709050 +
Lapu Lapu9g02182 Chr9 36544772 36546756 -
Lasa Lasa5g03664 Chr5 583771268 583772986 +
Lele Lele01g0886 Chr01 5129795 5131732 -
Lele Lele02g0872 Chr02 5287805 5290016 -
Lele Lele03g0886 Chr03 5151439 5153805 -
Lele Lele04g0885 Chr04 5441078 5448388 -
Lja Lja1g4201 Chr1 53668679 53671665 -
Mepo Mepo3g07093 Chr3 84622964 84625508 +
Mesa Mesa9g04620 Chr9 80167954 80169710 +
Mibi Mibi05g1042 Chr05 12803005 12805240 -
Mtr Mtr3g3602 Chr3 49911992 49914616 +
Phac Phac9g01646 Chr9 13521656 13524238 -
Phco Phco7g00421 Chr7 2964677 2966357 +
Prci Prci8g0306 Chr8 1932670 1935744 -
Psa Psa5g1060 Chr5 81866557 81868959 -
Pste Pste2g00952 Chr2 10146627 10148286 +
Pvu Pvu9g0641 Chr9 10900672 10903227 +
Rops Rops10g01057 Chr10 22275461 22277938 -
Seca Seca4g01550 Chr4 25028419 25030546 -
Spst Spst9g00426 Chr9 3784995 3786675 +
Sto Sto5g0290 Chr5 1728730 1731003 +
Sto Sto9g3591 Chr9 34676379 34678438 -
Tpr Tpr3g3424 Chr3 37756903 37759489 +
Trre Trre5g04526 Chr5 47203292 47203510 -
Tsu Tsu07g01016 Chr07 8458450 8461336 -
Vian Vian4g02279 Chr4 39626628 39628326 -
Vifa Vifa2g03545 Chr2 1030481632 1030483355 +
Vimu Vimu10g03349 Chr10 43579804 43590315 -
Viun Viun9g03528 Chr9 41109326 41111816 -
Vivi Vivi3g02002 Chr3 33273569 33276056 -
Vra Vra5g1539 Chr5 22013378 22015939 -
Vvi Vvi18g0938 Chr18 9614160 9619672 +
Bva Bva06g02049 Chr06 13672177 13675244 -
Bva Bva10g00763 Chr10 6168773 6172516 +
Sto Sto5g0289 Chr5 1723215 1725513 -
Sto Sto9g3594 Chr9 34695150 34697926 +
Vvi Vvi18g0939 Chr18 9622416 9623096 -
Bva Bva10g00764 Chr10 6173077 6174426 -
Gma Gma16g01328 Chr16 32165046 32166179 +
Vvi Vvi18g0940 Chr18 9625486 9628671 -
Bva Bva10g00765 Chr10 6175394 6178358 -
Sto Sto5g0287 Chr5 1714938 1717037 +
Vvi Vvi18g0941 Chr18 9650134 9653301 +
Vvi Vvi18g0942 Chr18 9655098 9656551 +
Vvi Vvi18g0943 Chr18 9656811 9659663 +
Gma Gma16g01326 Chr16 32122116 32125994 -
Vvi Vvi18g0944 Chr18 9665889 9666536 +
Vvi Vvi18g0945 Chr18 9669874 9675412 +
Adu Adu06g03242 Chr06 110766688 110768975 +
Aed Aed11g0170 Chr11 1365222 1370299 -
Aev Aev07g0807 Chr07 5439645 5442681 -
Ahy Ahy16g3591 Chr16 153502762 153506574 +
Aip Aip06g03858 Chr06 136233659 136239763 +
Amo Amo16g3907 Chr16 150839097 150843141 +
Apr Apr9g0461 Chr9 6409079 6413365 +
Arst Arst6g04186 Chr6 109874148 109877127 +
Bach Bach3g02283 Chr3 29575405 29578861 +
Bva Bva10g00767 Chr10 6184697 6189247 +
Car Car04g03470 Chr04 63737449 63742782 +
Cca Cca05g00219 Chr05 4678081 4682732 +
Gma Gma14g00685 Chr14 6774461 6778883 -
Gma Gma17g02354 Chr17 41555112 41558865 +
Lal Lal10g0797 Chr10 15696728 15702267 -
Lasa Lasa6g00142 Chr6 4985065 4988151 +
Lja Lja5g3185 Chr5 61815319 61825990 +
Mal Mal1g5841 Chr1 135977884 135980644 +
Mesa Mesa1g00249 Chr1 2940403 2942038 -
Mtr Mtr1g0557 Chr1 6447255 6449934 +
Phco Phco2g00216 Chr2 1694210 1697580 -
Pste Pste8g01111 Chr8 5783312 5786251 +
Pte Pte2g01186 Chr2 13007595 13011353 +
Pumo Pumo9g00197 Chr9 2847646 2851651 -
Pvu Pvu1g0190 Chr1 1587679 1591663 -
Rops Rops9g02257 Chr9 41739262 41743573 +
Seca Seca8g03772 Chr8 107983945 107985799 +
Spst Spst8g02103 Chr8 29314332 29317669 +
Ssu Ssu5g0197 Chr5 4215606 4219635 -
Sto Sto5g0286 Chr5 1695808 1704843 -
Trre Trre1g00276 Chr1 1996351 1999959 -
Tsu Tsu01g00353 Chr01 2959312 2962378 -
Vian Vian7g00774 Chr7 15996841 16000218 +
Vifa Vifa3g04976 Chr3 1446076002 1446080268 +
Vimu Vimu1g03045 Chr1 42859199 42863616 +
Viun Viun8g00270 Chr8 1744605 1748472 -
Vivi Vivi4g05692 Chr4 193225688 193228887 +
Vra Vra6g1901 Chr6 35602149 35606110 +