Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi18g0943 ATGCATATTTCACTATGGAAACCGATATCACACTGTGCGGCCCTAATCTTGGTCAAGAAGGGCAGGAGGAGAGATGGTTCTGGTTTGACAGAGGACGTCAAGCGAAAGCCCTCGATTCTCCGGCAATTGCAGGAGAACAAGCTCAGGGAGGCTCTTGAAGAGGCATCTGAAGATGGGTCTCTCGTAAAATCCCAAGATATCGACTCTGAGTCCGCTAATCAAGATGGTAACTTTGGGCGCTCGAGATCTCTTGCTAGGCTCCATGCTCAGAAGGAGTTCTTGCGAGCCACTGCTCTCGCAGCAGAGCGAGTATTCTGCTCGGCAGACTCCATTCCTAATCTACGTGATGCGTTCTCCAAGTTCCTCACTATGTACCCCAAGTTCCAATCCACGGAAAAGATTGATCAGCTGAGGTCAGACGAGTACGAGCACTTGGCTGAATTGTATGCGAAGGTATGCCTCGATTTCTGTGGCTTTGGGCTATTTTCTTACCTTCAAACTCATCATAATTGGGAATCATCGGCATTTAGCTTATCAGAGATAACTGCAAATCTGAGCAACCATGCTCTTTATGGGGGTGCCGAGAAAGGTACCGTAGAGCACGATATCAAGACTAGGATTATGGACTATTTGAACATACCTGAAAATGAGTATGGCCTTGTTTTTACTGTTAGTAGAGGATCTGCATTTAAATTGCTCGCTGAATCTTACCCTTTCCAAACAAATAGAAGGCTGTTGACCATGTTTGATCATGAGAGCCAGTCTGTGAATTGGATGGCTCAAAGTGCTAAAGAGAAAGGTGCAAAGGTTTACAGTGCCTGGTTTAGATGGCCAACCCTGAAACTCTGCTCGAGGGAACTGAGAAAGCAGATCTCAAACAAGAAGAGAAGGAAGAAGGACTCTGCAGCTGGGCTTTTTGTGTTCCCTGTTCAGTCTAGGGTTACTGGGGCCAAGTATTCTTACCAGTGGATGGCACTTGCTCAACAAAACAATTGGCATGTTTTGCTTGACGCTGGATCCTTAGGTCCCAAGGATATGGATTCACTTGGCTTGTCTCTCTTCCGGCCAGATTTTATAATCACGTCATTTTACAGGGTGTTTGGGTCTGACCCTACTGGATTTGGATGCCTCTTGATCAAGAAGTCTGTGATGGGAAGCCTGCAAAATCAGTGTGGGCGAACTGGGTCTGGAATGGTGAGGATCCTACCAGTTTTTCCCCAATACCTGAGTGATTCTATGGATGGTTTGGATGGACTGGGTGGGCACAACGACAATGCAAGCAATGATGATGAAGAATTGATGACTGAAACTCATGGGGGCTCTTCACAGATGCCTGCCTTTTCAGGTGTGTTCACTTCTACTCAGGTGAGGGATGTTTTTGAGACAGAGTTGGATCAAGATAACAGCTCAGACAGGGATGGAGCAAGCACTATTATTGAGGAAGCTGAAAGCATTTCGATTGGTGAGGTTATGAAAAGTCCAATTTTCAGTGAAGATGAGTTATCAGACAACTCATACTGGATTGATTTGGGTCAGAGTCCATTTGGTTCAGATAATTCTGGCCAGTTGACCAAACAGAAAGCAGGCTCACCATTACCACCCTCATGGTTTTCGGGCAGGAGAAACAATAAGCACCTCTCTCCAAAACCAGCATTAAACATGTCGAAGAGTCCAATATATGATGACAGGAGGATAAATCTCAGACTGCATGATGACCCTGTGTTATCTTTTGATGCGGCTGTATTATCAGTGTCACAGGAGCTAGACCTGATTAAGGGGATCCCAGAAGAGGAACATTTTGGAGAATTGAACCCAGCTTTTGGAACTAGTGGGAAAAAAGCAGATTCACAGCATGTTGGAGAGATTCAAGAAGAACCTGATGGTAGAGAAGAAACCATGCTGACTGGTTGTAAGTTGAGTCCCACGGTAAATGGATTTGGAACCAGGAACCGGACTTCTGCCTCTCTACGGGGTAACCTTGAGAACACTTCAATGTCTGAAAGTTGCCAAGAAACAAAAGAAAGTGCCATAAGAAGAGAGACAGAGGGTGAGTTTAGACTATTGGGAAGAAGGGAGGGAAATAGATTTGCTGGTGGCAGATTTTTTGGTTTGGAAGAGACTGATTTAGCTGCAAGCATGGGCCGCAGGGTATCTTTTACCATGGAAGATAACCGGAAAGAAAGTTTGAGCCAATTCTTGGAGCCTGGTGAAGTTTCTCTAACTACCCTTGGTGACGATGAGTCCATGAGTGAAGGAGATTATGGTGATGGCCTAGAGTGGGGCAGGAGGGAGCCTGAGATAATTTGCCGGCATCTTGATCACATTAACATGTTGGGTCTTAACAAAACTACCCTCAGACTGCGGTATCTGATCAATTGGCTTGTGACTTCATTGCTTCAACTTCGTTTATCCAGTTCAGACTTAGATATGGGAGTGCCTCTTGTACAAATATACGGCCCAAAGATCAAGTATGAGAGGGGTGCAGCTGTAGCCTTTAACGTGAGAAACAGCCATGGAGGGATGATTCACCCGGAAGTTGTTCAGAGATTGGCTGAGAAAAATGGAATATCTCTTGGTATCGGTTTCCTCAGCCATATCCGGATTGTAGACAGCCCAAAACAGCACCGAGGAGGATTAGATCCTGAAGATACAGCTTTGTGCAAGTCAATGGCCAATTGCCGGCAAGATGGTAAAGACATGTTCTTCCGAGTTGAGGTTGTTACAGCATCACTCAGTTTCCTGACTAACTTTGAAGACGTGTATAAGATGTGGGCTTTTGTGGCTAAGTTTCTCAATTCATCATTTGTTGAAGGGGATGGATTATCCACAGTGCCAGAGGGTTCTGAAATGTAA 2853 0.4532 MHISLWKPISHCAALILVKKGRRRDGSGLTEDVKRKPSILRQLQENKLREALEEASEDGSLVKSQDIDSESANQDGNFGRSRSLARLHAQKEFLRATALAAERVFCSADSIPNLRDAFSKFLTMYPKFQSTEKIDQLRSDEYEHLAELYAKVCLDFCGFGLFSYLQTHHNWESSAFSLSEITANLSNHALYGGAEKGTVEHDIKTRIMDYLNIPENEYGLVFTVSRGSAFKLLAESYPFQTNRRLLTMFDHESQSVNWMAQSAKEKGAKVYSAWFRWPTLKLCSRELRKQISNKKRRKKDSAAGLFVFPVQSRVTGAKYSYQWMALAQQNNWHVLLDAGSLGPKDMDSLGLSLFRPDFIITSFYRVFGSDPTGFGCLLIKKSVMGSLQNQCGRTGSGMVRILPVFPQYLSDSMDGLDGLGGHNDNASNDDEELMTETHGGSSQMPAFSGVFTSTQVRDVFETELDQDNSSDRDGASTIIEEAESISIGEVMKSPIFSEDELSDNSYWIDLGQSPFGSDNSGQLTKQKAGSPLPPSWFSGRRNNKHLSPKPALNMSKSPIYDDRRINLRLHDDPVLSFDAAVLSVSQELDLIKGIPEEEHFGELNPAFGTSGKKADSQHVGEIQEEPDGREETMLTGCKLSPTVNGFGTRNRTSASLRGNLENTSMSESCQETKESAIRRETEGEFRLLGRREGNRFAGGRFFGLEETDLAASMGRRVSFTMEDNRKESLSQFLEPGEVSLTTLGDDESMSEGDYGDGLEWGRREPEIICRHLDHINMLGLNKTTLRLRYLINWLVTSLLQLRLSSSDLDMGVPLVQIYGPKIKYERGAAVAFNVRNSHGGMIHPEVVQRLAEKNGISLGIGFLSHIRIVDSPKQHRGGLDPEDTALCKSMANCRQDGKDMFFRVEVVTASLSFLTNFEDVYKMWAFVAKFLNSSFVEGDGLSTVPEGSEM* 951
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi18g0943 950 Gene3D - 175 417 IPR015421 GO:0003824
Vvi18g0943 950 MobiDBLite consensus disorder prediction 54 77 - -
Vvi18g0943 950 Gene3D Aspartate Aminotransferase, domain 1 766 937 IPR015422 GO:0003824
Vvi18g0943 950 MobiDBLite consensus disorder prediction 517 557 - -
Vvi18g0943 950 MobiDBLite consensus disorder prediction 419 444 - -
Vvi18g0943 950 SUPERFAMILY PLP-dependent transferases 191 392 IPR015424 -
Vvi18g0943 950 MobiDBLite consensus disorder prediction 517 542 - -
Vvi18g0943 950 PANTHER MOLYBDOPTERIN COFACTOR SULFURASE MOSC 115 913 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi18g0943 Vvi-Chr18 9656811 9659663 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi18g0943 - - vvi:100259174 1873.6