Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Psa5g1060 ATGGCTATACGTGTAACCTTCTCCTTTTCAGGCTATGTCGCCCAAAATCTAGTTTCCTCCGCCGGCGTTCGAGTCGCCAATTCTCGTTGTGTCCAAGAATGCTGCATCCTCTCTCGCTTCTTTGGAACCAACCAGAAACGCGATCTCGAACGTTCCGGCGGCGTTCGCAGTCTCTACCCCGATCTCCGGAGACCTAAAAATTCATCTCCTGTTTCCGCCTATTCCACCCTCGCCGGAGAGATTCTCACCGAAGGATGTACGAATCCGATCGTATTAGGTTTGATTTCGATGATGAAGTCAACGAGTGTTGTATCCGGGTCAACTTCGGCGGCTATGGGTATTATGGGTATTGCACCATTCAAAACCTCTTCGATTATACCATTTTTGCAGGGTTCCAAGTGGCTTCCTTGCAACGAATCTGTTCCTGAACCTACAACGTGGGAGGTTGATAAAGGTGGAACGGAGTGCGTTACTGTTTCTAACACAAAATCGCGTTTGAGTCAAAAGGAGACTAGTGGTTGGATTTCAAAATTGTTGAGTGTTTGTTCAGAAGATGCTAAAGCTGTGTTCACTGCTGTTACTGTTAGTTTACTGTTTAAATCGTTCTTGGCTGAACCTAAATCTATTCCTTCTGCTTCTATGTATCCAACTCTTGAAGTTGGTGATCGTGTTTTAACAGAAAAGTTTTCATTCTTCTTTAGAAAACCAGATGTTTCTGATATTGTGATTTTCAAAGCACCTCCTTGTTTGAAGGTATCTTTACTTGCTACAGAAGTACAATTATTGCAGTTTTTTTGA 798 0.4336 MAIRVTFSFSGYVAQNLVSSAGVRVANSRCVQECCILSRFFGTNQKRDLERSGGVRSLYPDLRRPKNSSPVSAYSTLAGEILTEGCTNPIVLGLISMMKSTSVVSGSTSAAMGIMGIAPFKTSSIIPFLQGSKWLPCNESVPEPTTWEVDKGGTECVTVSNTKSRLSQKETSGWISKLLSVCSEDAKAVFTAVTVSLLFKSFLAEPKSIPSASMYPTLEVGDRVLTEKFSFFFRKPDVSDIVIFKAPPCLKVSLLATEVQLLQFF* 266
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Psa5g1060 265 CDD S26_SPase_I 205 247 IPR019533 GO:0004252|GO:0006465
Psa5g1060 265 Gene3D Umud Fragment, subunit A 199 259 - -
Psa5g1060 265 Pfam Signal peptidase, peptidase S26 186 248 IPR019533 GO:0004252|GO:0006465
Psa5g1060 265 ProSitePatterns Signal peptidases I serine active site. 211 218 IPR019756 GO:0004252|GO:0016021
Psa5g1060 265 PANTHER SIGNAL PEPTIDASE I 1 251 IPR000223 GO:0006508|GO:0008236|GO:0016020
Psa5g1060 265 PANTHER THYLAKOIDAL PROCESSING PEPTIDASE 2, CHLOROPLASTIC-RELATED 1 251 - -
Psa5g1060 265 SUPERFAMILY LexA/Signal peptidase 201 248 IPR036286 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Psa5g1060 Psa-Chr5 81866557 81868959 Dispersed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Psa5g1060 K03100 - gmx:100817525 329.717
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Psa5g1060 5 81866557 81868959 Psa5g1060 5 81866557 81868959 ECH