Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1372 ATGTTTTCTCAAGTACGTATGCCTGCAACATCATCGGTTTTTTCAGCATACACCACCTTTGTTGCATCTGCAATGCTGGTTAAAACCATGCTACATGAAGTTCAGACCTTGGCCAAACAGCTCGTACCTCAACAACTCCAGGACAAGATTTTATCAGGAATTGGAAGGCTTCTTGGGGACCCCTCCTCTCAGATGACTCTTGTCATTGATGAATACAACGGCTACACCATGAATCAAATCTTTGAGGCTTCTCAAATCTACCTGCAGACCAAGATCAGCCCAGCAGTAAGTAGGCTCAGGGTTTCCCGATCTCCAAGAGAGAAGAACCTCTTGGTCACCATCAGCAACGGTGAAAAGGTTATTGATGTATTTGAGGGAATTCAACTCAAATGGGAAATGGTTTCCAGTACTGAAAAGGTCATGGGTGGAGACAAGGGCGAACGTAGATCAATTGAGCTCAGTTTCCTTAAGAAAAACATGGAGAAGGTATTGAGCTCTTACTTGCCATATGTGGTGGAGAGATCAGAATCGATAAAAGAAGAAAACAAGGTGGTGAAGCTCTATTCCCTAGGGAACTTCCAAGGAGGAGCCATGGTTGGTGGGGGAGCATGGGGGTCCATCAATCTCGACCACCCCTCAACTTTTGAAACATTGGCCATGGATTTGAAGCTCAAGGAGGACTTGATAAAAGACTTGGACAGATTTGTAAGGAGGAGGAAGTTCTATAAAAGAGTTGGTAAGGCATGGAAAAGAGGGTATTTGTTGTATGGCCCTCCAGGCACAGGCAAGACAAGCTTGATTGCAGCCATGGCCAACTATCTGAAATTTGATGTCTATGATTTAGAGCTCACAAGTCTCCAGAGGAACTCACAGCTTAGAAAGCTCTTAGTCTCCACCAAGAACAGATCAATACTTGTGATTGAGGACATCGATTGCAGCACTGAATTACAAGACAGACAAGCTGGAAGATACAACCAACCTACCACTCAGCTGACACTATCTGGGCTGCTTAATTTCATTGATGGGCTGTGGTCAAGCTGTGGGGATGAGAGGATAATAGTGTTCACAACAAATCACAAAGACAGGATAGATCCTGCATTGCTGAGACCAGGGCGCATGGATATGCACATCCACATGTCCTACTGCACTCCCTATGGATTTAAGACCCTGGCTTCCAACTACCTTGGAGTAAGCAACCACAGACTGTTCACTGAAATCGAAAGGCTGATAACAGAGGTGGAGGTGACCCCAGCCGAGATTGCAGAAGAGCTCATGAAAAGTGAGGAAGCTGATGTGGCCCTTGAAGGTCTCATCGAGTTCCTCAAGAGGGCCAAGATTGCAGAAAATAAATCAAATGGTGAGGGAAAAGAAGTTGATGAACAAGGAACAGAAAGGCGGGATGTTGTTGAGAGTGAAAAGGTAGTAGAAACAAAGAGGCAGAAAGAAGATAGTGAATGGAGAACTAGAGATTTCTGA 1476 0.4492 MFSQVRMPATSSVFSAYTTFVASAMLVKTMLHEVQTLAKQLVPQQLQDKILSGIGRLLGDPSSQMTLVIDEYNGYTMNQIFEASQIYLQTKISPAVSRLRVSRSPREKNLLVTISNGEKVIDVFEGIQLKWEMVSSTEKVMGGDKGERRSIELSFLKKNMEKVLSSYLPYVVERSESIKEENKVVKLYSLGNFQGGAMVGGGAWGSINLDHPSTFETLAMDLKLKEDLIKDLDRFVRRRKFYKRVGKAWKRGYLLYGPPGTGKTSLIAAMANYLKFDVYDLELTSLQRNSQLRKLLVSTKNRSILVIEDIDCSTELQDRQAGRYNQPTTQLTLSGLLNFIDGLWSSCGDERIIVFTTNHKDRIDPALLRPGRMDMHIHMSYCTPYGFKTLASNYLGVSNHRLFTEIERLITEVEVTPAEIAEELMKSEEADVALEGLIEFLKRAKIAENKSNGEGKEVDEQGTERRDVVESEKVVETKRQKEDSEWRTRDF* 492
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1372 491 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 160 427 IPR027417 -
Vvi1g1372 491 MobiDBLite consensus disorder prediction 449 491 - -
Vvi1g1372 491 Gene3D - 378 451 - -
Vvi1g1372 491 Pfam Domain associated at C-terminal with AAA 42 134 IPR025753 -
Vvi1g1372 491 ProSitePatterns AAA-protein family signature. 351 369 IPR003960 GO:0005524|GO:0016887
Vvi1g1372 491 Gene3D - 206 377 IPR027417 -
Vvi1g1372 491 PANTHER BCS1 AAA-TYPE ATPASE 16 448 - -
Vvi1g1372 491 SMART AAA_5 249 383 IPR003593 GO:0016887
Vvi1g1372 491 CDD RecA-like_BCS1 228 379 - -
Vvi1g1372 491 Pfam ATPase family associated with various cellular activities (AAA) 254 380 IPR003959 GO:0005524|GO:0016887
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1372 Vvi-Chr1 19913049 19914625 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1372 191 374 Miscellaneous Gene Families AT3G47060 32.812 1.22e-13 71.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1372 - K08900 vvi:100252727 928.317