Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1375 ATGAAGCTTGACACTAGTGGTCTTGAGTCAACTGTACCGCTCTTCGGGGCTAATAGCGAGCTTCTTGGTGGGTTTTCAGCTGCTCCTTCATTTGAGCTTCCAAACACTACTGATTTTGATGGGTTTCAGAAAGATGCTATTCAAATGGTGAAGCCAGCAAAGGGAACAACAACTCTTGCCTTCATTTTTAAGGAGGGTGTAATGGTTGCTGCTGATTCTCGTGCTAGCATGGGAGGATATATCTCATCACAATCTGTGAAGAAAATTATTGAAATTAATCCCTACATGCTTGGCACAATGGCTGGAGGAGCTGCTGATTGCCAGTTTTGGCACAGAAATTTGGGCATTAAGTGCCGACTGCATGAACTTGCAAACAAGCGAAGGATTTCAGTTACAGGGGCTTCAAAACTGCTGGCAAACATTCTATATTCTTACCGTGGAATGGGTCTATCTGTTGGGACCATGATTGCTGGGTGGGATGAAACGGGTCCTGGACTGTATTATGTGGACAGTGAAGGGGGCAGGCTGAAAGGAACACGATTCTCTGTTGGATCTGGTTCGCCTTATGCTTATGGTGTACTGGATAATGGATACCGTTATGATATGTCTGTTGAGGAAGCTGCTGAATTGGCTAGACGATCTATTTATCATGCGACATTCCGTGATGGAGCTAGTGGTGGAGTTGCAAGCGTTTATTATGTGGGGCCAAATGGGTGGAAGAAGCTGTCTGGTGATGATGTCGGAGAACTCCACTACAAATACTACCCGGTTATGCCAAGCACAGTGGAACAGGAAATGGTTGAAGTAGCAGGAGCTTGA 819 0.4554 MKLDTSGLESTVPLFGANSELLGGFSAAPSFELPNTTDFDGFQKDAIQMVKPAKGTTTLAFIFKEGVMVAADSRASMGGYISSQSVKKIIEINPYMLGTMAGGAADCQFWHRNLGIKCRLHELANKRRISVTGASKLLANILYSYRGMGLSVGTMIAGWDETGPGLYYVDSEGGRLKGTRFSVGSGSPYAYGVLDNGYRYDMSVEEAAELARRSIYHATFRDGASGGVASVYYVGPNGWKKLSGDDVGELHYKYYPVMPSTVEQEMVEVAGA* 273
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1375 272 Pfam Proteasome subunit 54 234 IPR001353 GO:0005839|GO:0051603
Vvi1g1375 272 Gene3D Glutamine Phosphoribosylpyrophosphate, subunit 1, domain 1 56 264 IPR029055 -
Vvi1g1375 272 PRINTS Proteasome component signature 63 78 IPR000243 GO:0004298|GO:0005839|GO:0051603
Vvi1g1375 272 PRINTS Proteasome component signature 184 195 IPR000243 GO:0004298|GO:0005839|GO:0051603
Vvi1g1375 272 PRINTS Proteasome component signature 195 206 IPR000243 GO:0004298|GO:0005839|GO:0051603
Vvi1g1375 272 PRINTS Proteasome component signature 220 231 IPR000243 GO:0004298|GO:0005839|GO:0051603
Vvi1g1375 272 CDD proteasome_beta_type_5 56 243 - -
Vvi1g1375 272 SUPERFAMILY N-terminal nucleophile aminohydrolases (Ntn hydrolases) 51 254 IPR029055 -
Vvi1g1375 272 PANTHER METALLOPROTEASE TLDD 51 242 IPR023333 -
Vvi1g1375 272 ProSitePatterns Proteasome beta-type subunits signature. 59 106 IPR016050 GO:0005839|GO:0051603
Vvi1g1375 272 FunFam Proteasome subunit beta 56 265 - -
Vvi1g1375 272 ProSiteProfiles Proteasome beta-type subunit profile. 55 234 IPR023333 -
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1375 K02737 - vvi:100261458 550.051