Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1377 ATGGAGAAACGAGGAGTTGATGCTGGACCTATTGACCTGGACCAGGCTACAGTGACCTTTGAACCGGATCAGGGCGGAGGTGGGGGATTACATGTTCCTGGGAAGGATAGAGTAGTTTTCAGACCTCCTCAGAGGAAATCACTATTAGGGTTAGATGTCCTTGCTGATGCAAAAAGAGGAGGATCTAAGGCTGATGGCGCATTCAAGGTTCCAAGAGAAAAAGGTGCTTCTGTTGTGGCTTCTATGGATGAAGAGGAGAGTTCCTTGTCCTCTGGAATAGACGAAGAAATAAGTACTGTGATTAGTGGTGTGCGTAATGGTTCTGGCAGGCGATATCGTGAAACAGCTGCAAGCGAGGCATCTCATTTAGAAAGTAATGTGACTCAAGAAGGAGCAGTCAGTGACACATTTGAAACTCATCGCTCAAATGAACGCATGCCTTCTGAAAGTCCAGCTACTTCTTCTGGAAGTTCCCGCAGTTCTTGGTCTAGGAGTTCTAGGTATGAAAGGGATAATCGCAATAGTGAGAGGAGAGATTACAAGGATGACACTAGAAGTGAAAACAGGAGGGTAAGACACAGATATGATTATGATGATAGAGAGCAGAATCGTGAAGGGGAAGCACGTGGTCGGTATGCGCAGGAGTATAATGGGCAGTATGGAAGAAAACGAAGTAAATATGAAGTCTCTAGGAGGACTCCTGGCAGATCTGATTGGGACGATGGCAGATGGGAATGGGAGGAGACACCACAACGAGATGGTCATTCAAATACCAGTAGGCGCCATCAACCTTCACCATCCCCAATGTTAGTTGGGTCCTCACCTGATGCCCGACTTGTTTCTCCATGGTTTGGTGGCCAGACACCTCACACCACTGGGTCTGCCGCTTCTCCCTGGGACACTATCTCTCCCTCTCCCGTTCCAATACGTGCTTCTGGAGCCTCAGTTAGATCTTCAAGTTCTAAACACAGTGGAAGATCCCATCAACTTAATTTTTCTGTGGAAAATTTGCAATCATTTGAGGATAAGGAAGATGATAAGAGTTATTTGGCCAATCAAGAGATTACAGAAAGTATGCGTTTAGAGATGGAATACAATTCTGACCGAGCATGGTATGATAGAGAAGAAGGCAACACCATGTTTGATGGGGGCACCTCATCATTTTTTCTTGGGGATGAGGCTTCTTTCCAAAAAAAAGAGGCAGAGTTGGCCAAGAAACTTGTTCGGCGAGATGGAACTAAAATGACCCTTGCTCAGAGCAAAAAGTTATCGCAGCTAACAGCCGACAATGCTCAGTGGGAAGACCGGCAACTGTTGAGATCTGGAGCTGTTAGAGGTACTGAGGTGCAGACTGAGTTTGATGACGAGGAAGAGCGCAAGGTTATTCTTCTTGTCCATGATACAAAACCTCCTTTCTTAGATGGTAGGGTTGTTTTTACTAAGCAAGCAGAGCCAATAATGCCATTAAAAGATCCGACATCAGACATGGCCATAATATCACGCAAAGGATCTGCTTTGGTTAGGGAAGTTCATGAAAAGCAAAGTATGAACAAATCACGCCAAAGATTTTGGGAGCTTGCAGGCTCAAAACTTGGTGATATTCTTGGTGTTGAGAAGACAGCAGAACAGATTGACGCAGATACTGCTGTAGTGGGTGAAGAGGGAGAAGTTGATTTTAAGGAAGATGCAAAGTTTGCACAGCACTTGAAGAAGGATGAAGCTGTGAGTGAGTTTGCAAAGTCAAAAACATTAGCAGAGCAACGGCAGTATCTACCCATATATTCTGTACGTGAGGAGTTATTGCAGGTAATTCGGGAAAACCAGGTTGTTGTGGTCGTTGGAGAAACGGGTTCAGGAAAGACTACTCAACTGACGCAGTACCTGCATGAAGATGGCTACACTACAAATGGTATTGTTGGTTGCACCCAACCAAGGCGTGTCGCAGCCATGAGTGTTGCCAAAAGAGTGAGCGAAGAGATGGAAACTGAGTTGGGGGATAAGGTTGGCTATGCCATTCGTTTTGAGGATGTGACTGGGCCGAACACCAAAATTAAGTACATGACTGATGGAGTTCTTATGCGTGAGACATTGAAAGATTCTGAGCTTGACAAGTATCGTGTTGTTGTGATGGATGAAGCACATGAGAGATCACTCAACACGGATGTGCTCTTTGGAATACTGAAGAAAGTGGTTGCTCAGCGTCGTGATTTCAAGCTCATTGTGACATCTGCAACTTTAAATGCACAAAAATTCTCAAACTTCTTTGGAAGTGTTCCAATATTCCACATCCCTGGAAGAACTTTCCCTGTGAATATATTGTACAGCAAAACTCCTTGTGAAGATTATGTCGAAGGTGCAGTGAAGCAGGCAATGACTGTCCACATCACCAGCCCTCCAGGTGATATTCTCATCTTCATGACTGGCCAAGATGAGATTGAGGCAACTTGTTATGCGCTTGCAGAGCGCATGGAACAGCTCGTATCCACGACCAAGAAAGGGGTGCCTAAGCTCTCAATACTCCCTATATACTCCCAGCTGCCAGCAGATTTGCAAGCAAAAATATTCCAAAAAGCTGAAGATGGAGCCCGAAAGTGCATTGTTGCTACCAATATTGCTGAGACATCTTTGACCGTGGATGGAATTTTTTATGTCATTGATACGGGTTATGGTAAAATGAAAGTATACAACCCCAGGATGGGTATGGATGCGCTTCAAGTGTTCCCTGTCAGCCGTGCTGCTGCTGACCAGCGCGCTGGGCGTGCTGGTAGAACTGGGCCTGGGACTTGTTATCGGCTTTATACAGAGAGTGCTTACCTCAATGAACTGCTGGCCAGTCCCGTGCCGGAGATCCAAAGGACCAACCTTGGAAATGTGGTTTTGCTGCTCAAGAGTCTTAAAATTGAGAACTTGCTGGATTTCGACTTCATGGACCCACCTCCGCAGGATAACATCCTGAATTCCATGTACCAGTTGTGGGTCTTAGGTGCCCTTAACAATGTTGGGGGCCTAACTGAACTTGGCTGGAAAATGGTGGAGTTCCCATTGGATCCACCACTGGCTAAGATGCTCTTGATAGGGGAACAGCTAGAATGCATAAACGAGGTTCTGACCATTGTCTCAATGCTTTCAGTGCCGTCGGTATTCTTTCGGCCAAAGGATAGGGCAGAGGAGAGTGATGCTGCCAGAGAAAAATTCTTTGTTCCTGAATCTGACCACTTAACACTACTCAATGTTTACCAGCAGTGGAAAGCTAATCAGTACAGGGGAGACTGGTGTAATGACCACTTCTTGCATGTTAAAGGGCTACGTAAGGCTAGAGAGGTGAGATCCCAGCTTCTGGATATTCTCAAAACACTGAAAATCCCTCTGACCTCTTGTGGGCCTGATTGGGACGTTGTAAGAAAAGCTATCTGTTCAGCATACTTCCATAACGCGGCGAGATTAAAGGGGGTTGGGGAGTATGTTAATTGCAGAAATGGGATGCCCTGCCACTTGCATCCGAGCAGTGCACTGTATGGATTGGGTTACACACCAGATTATGTGGTTTATCATGAACTGATATTGACAGCCAAAGAGTACATGCAGTGTGCCACAGCGGTTGAGCCCCAGTGGCTGGCCGAGCTTGGACCCATGTTCTTCTCAGTGAAGGACTCGGATACTTCGATGCTAGAGCACAAGAAGAGACAGAAGGAAGAAAAGTCTGCCATGGAGGAGGAGATGGAGAATTTGAGGAAGGAGCAAGAAGAGGCAGAGAGAAAAAGCAAGGAGAAGGAGAGGAAGAAGAGGGCGAAGCAGCAGCAACAGGTCTCGATGCCTGGCCTGCGCCAGGGGTCATCTACTTACTTGAGGCCAAAGAAGATGGGTTTGTAA 3870 0.4623 MEKRGVDAGPIDLDQATVTFEPDQGGGGGLHVPGKDRVVFRPPQRKSLLGLDVLADAKRGGSKADGAFKVPREKGASVVASMDEEESSLSSGIDEEISTVISGVRNGSGRRYRETAASEASHLESNVTQEGAVSDTFETHRSNERMPSESPATSSGSSRSSWSRSSRYERDNRNSERRDYKDDTRSENRRVRHRYDYDDREQNREGEARGRYAQEYNGQYGRKRSKYEVSRRTPGRSDWDDGRWEWEETPQRDGHSNTSRRHQPSPSPMLVGSSPDARLVSPWFGGQTPHTTGSAASPWDTISPSPVPIRASGASVRSSSSKHSGRSHQLNFSVENLQSFEDKEDDKSYLANQEITESMRLEMEYNSDRAWYDREEGNTMFDGGTSSFFLGDEASFQKKEAELAKKLVRRDGTKMTLAQSKKLSQLTADNAQWEDRQLLRSGAVRGTEVQTEFDDEEERKVILLVHDTKPPFLDGRVVFTKQAEPIMPLKDPTSDMAIISRKGSALVREVHEKQSMNKSRQRFWELAGSKLGDILGVEKTAEQIDADTAVVGEEGEVDFKEDAKFAQHLKKDEAVSEFAKSKTLAEQRQYLPIYSVREELLQVIRENQVVVVVGETGSGKTTQLTQYLHEDGYTTNGIVGCTQPRRVAAMSVAKRVSEEMETELGDKVGYAIRFEDVTGPNTKIKYMTDGVLMRETLKDSELDKYRVVVMDEAHERSLNTDVLFGILKKVVAQRRDFKLIVTSATLNAQKFSNFFGSVPIFHIPGRTFPVNILYSKTPCEDYVEGAVKQAMTVHITSPPGDILIFMTGQDEIEATCYALAERMEQLVSTTKKGVPKLSILPIYSQLPADLQAKIFQKAEDGARKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPRMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTESAYLNELLASPVPEIQRTNLGNVVLLLKSLKIENLLDFDFMDPPPQDNILNSMYQLWVLGALNNVGGLTELGWKMVEFPLDPPLAKMLLIGEQLECINEVLTIVSMLSVPSVFFRPKDRAEESDAAREKFFVPESDHLTLLNVYQQWKANQYRGDWCNDHFLHVKGLRKAREVRSQLLDILKTLKIPLTSCGPDWDVVRKAICSAYFHNAARLKGVGEYVNCRNGMPCHLHPSSALYGLGYTPDYVVYHELILTAKEYMQCATAVEPQWLAELGPMFFSVKDSDTSMLEHKKRQKEEKSAMEEEMENLRKEQEEAERKSKEKERKKRAKQQQQVSMPGLRQGSSTYLRPKKMGL* 1290
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1377 1289 MobiDBLite consensus disorder prediction 119 136 - -
Vvi1g1377 1289 MobiDBLite consensus disorder prediction 164 211 - -
Vvi1g1377 1289 Pfam Helicase conserved C-terminal domain 796 925 IPR001650 -
Vvi1g1377 1289 MobiDBLite consensus disorder prediction 285 301 - -
Vvi1g1377 1289 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase 767 945 - -
Vvi1g1377 1289 CDD SF2_C_RHA 768 933 - -
Vvi1g1377 1289 MobiDBLite consensus disorder prediction 146 163 - -
Vvi1g1377 1289 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 786 966 IPR001650 -
Vvi1g1377 1289 SMART ha2_5 986 1076 IPR007502 GO:0004386
Vvi1g1377 1289 FunFam pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7 544 766 - -
Vvi1g1377 1289 Coils Coil 1223 1267 - -
Vvi1g1377 1289 Pfam DEAD/DEAH box helicase 596 750 IPR011545 GO:0003676|GO:0005524
Vvi1g1377 1289 MobiDBLite consensus disorder prediction 1 37 - -
Vvi1g1377 1289 Gene3D - 767 944 IPR027417 -
Vvi1g1377 1289 MobiDBLite consensus disorder prediction 221 259 - -
Vvi1g1377 1289 SMART ultradead3 589 773 IPR014001 -
Vvi1g1377 1289 Gene3D - 543 766 IPR027417 -
Vvi1g1377 1289 FunFam Pre-mRNA-splicing factor ATP-dependent RNA helicase prp16 971 1072 - -
Vvi1g1377 1289 Pfam Helicase associated domain (HA2) 988 1074 IPR007502 GO:0004386
Vvi1g1377 1289 MobiDBLite consensus disorder prediction 1228 1289 - -
Vvi1g1377 1289 MobiDBLite consensus disorder prediction 83 105 - -
Vvi1g1377 1289 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 601 764 IPR014001 -
Vvi1g1377 1289 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 1133 1210 IPR011709 -
Vvi1g1377 1289 MobiDBLite consensus disorder prediction 312 330 - -
Vvi1g1377 1289 MobiDBLite consensus disorder prediction 1228 1265 - -
Vvi1g1377 1289 Gene3D - 972 1127 - -
Vvi1g1377 1289 PANTHER ATP-DEPENDENT RNA HELICASE 540 1237 - -
Vvi1g1377 1289 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 584 1205 IPR027417 -
Vvi1g1377 1289 MobiDBLite consensus disorder prediction 60 330 - -
Vvi1g1377 1289 SMART helicmild6 817 925 IPR001650 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1377 Vvi-Chr1 19961769 19994108 Dispersed/Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1377 K12815 - vvi:100261447 2466.8