Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1379 ATGATTAACTGCAACGTATATGAACGCATATTCAAGCGTTTCGATGAAGATGGTGATGGCAAACTCTCTCCTTCGGAGCTTCGACGCTGCGTGGGGACGATAGGGGAGGAGCTGCTCATGGAGGAGGCGCAGGAGGTGGTGGAGTCGATGGACTCGGACGGAGATGGGTTGCTGGGATTGGAGGAATTTGTGGGGTGGATGGAGAGAGAGGGTGAAGAAAGAAAGATGGAGGAGCTGAGAGAGGCTTTTGGGATGTACGAGATGGAAGGGAGTGGGTGTATTACTGCAAAGAGCTTGAAGAGGATGCTGAGCAGATTGGGGGAGTCGAGAAGTGTGGAAGAGTGCTGTGTTATGATCAGGCAGTTTGATGTAAATTGCGATGGGGTTCTTAGCTTTGATGAATTCAAGCTCATGATGCTATGA 423 0.5012 MINCNVYERIFKRFDEDGDGKLSPSELRRCVGTIGEELLMEEAQEVVESMDSDGDGLLGLEEFVGWMEREGEERKMEELREAFGMYEMEGSGCITAKSLKRMLSRLGESRSVEECCVMIRQFDVNCDGVLSFDEFKLMML* 141
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1379 140 Coils Coil 69 89 - -
Vvi1g1379 140 ProSiteProfiles EF-hand calcium-binding domain profile. 38 73 IPR002048 GO:0005509
Vvi1g1379 140 ProSitePatterns EF-hand calcium-binding domain. 51 63 IPR018247 -
Vvi1g1379 140 CDD EFh 78 139 IPR002048 GO:0005509
Vvi1g1379 140 PANTHER CALCIUM BINDING PROTEIN 58 139 - -
Vvi1g1379 140 SMART efh_1 78 106 IPR002048 GO:0005509
Vvi1g1379 140 SMART efh_1 42 70 IPR002048 GO:0005509
Vvi1g1379 140 SMART efh_1 114 140 IPR002048 GO:0005509
Vvi1g1379 140 SMART efh_1 6 34 IPR002048 GO:0005509
Vvi1g1379 140 FunFam Calmodulin A 4 68 - -
Vvi1g1379 140 ProSitePatterns EF-hand calcium-binding domain. 123 135 IPR018247 -
Vvi1g1379 140 ProSiteProfiles EF-hand calcium-binding domain profile. 2 37 IPR002048 GO:0005509
Vvi1g1379 140 Gene3D - 2 71 - -
Vvi1g1379 140 Pfam EF-hand domain pair 91 139 IPR002048 GO:0005509
Vvi1g1379 140 ProSiteProfiles EF-hand calcium-binding domain profile. 74 109 IPR002048 GO:0005509
Vvi1g1379 140 CDD EFh 7 67 IPR002048 GO:0005509
Vvi1g1379 140 Pfam EF-hand domain pair 8 68 IPR002048 GO:0005509
Vvi1g1379 140 SUPERFAMILY EF-hand 5 139 IPR011992 -
Vvi1g1379 140 ProSitePatterns EF-hand calcium-binding domain. 15 27 IPR018247 -
Vvi1g1379 140 FunFam Calmodulin A 69 140 - -
Vvi1g1379 140 Gene3D - 72 140 - -
Vvi1g1379 140 ProSiteProfiles EF-hand calcium-binding domain profile. 110 140 IPR002048 GO:0005509
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1379 Vvi-Chr1 20000284 20000706 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1379 2 139 EF-hand Containing Proteins AT5G42380 53.571 6.67e-41 133
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1379 K13448 - vvi:100266664 273.092