Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Phco2g02964 ATGGATATTGCCGAGGTTGAAGAAAATCTTTTTGCAGCAAGCGATGCCAAGTTACATGGAGAAATGTGCAAGTGTCTTTCTGCAATATACTGCAAGATATTGTTATTATTTCCTTCTTTAGAAGCAGCTAGGCCTAGGAGCAAATCTGGAATTCAGGCATTATGCTCATTACATGTAGCCTTAGAAAAGGCAAAGAATGTTCTTCGACACTGCTCAGAGTCTAGTAAACTTTACTTGGCTATAACCGCGGATTCTGTTCTTCTAAAATTTGAAAAGGCTAAATGTGCTCTTGAGGATAGTCTCAAACGGGTGGAAGATATTGTTCCTCAATCTATTGGTTGTCAGATTGATGAAATTGTGAATGAACTTTCAAGTACGGTATTTGCACTTGATCCTTCAGAGAAGCAAGTTGGGGATGATTTAATTGCATTGCTTCAAAAGGGAAGAAAGCTTAATGACTCTAATGACAGTGGTGAACTTGAATGTTTTCATCTAGCTGCTACTACTATTGGAATCACTTCTTCAAGAGCAGCTCTTGCAGAAAGAAGATCTCTAAAAAAACTTATAGAAAGAGCTCGAGCTGAGGATGATAGGCGGAAAGAATCAATTATTGCTTACCTTTTACACCTTATGAGGAAATATTCCAAATTATTTAGAAGTGAGTTCTCTGATGATAATGATTCTCAGGGTTCTCAACCTTGTTCTCCCACTGTTCAGAGATCTCTCGAGGATGGCAGTACTGGTGGTCATTGTCATGTCTTTGACAGACAGCTTTCAAAACTTAGTTCCTTTAACTTTAAGCCAAGTAATAGGGAATCAGGGCAGATGCTCGTTTTGCCTGAAGAGTTACGATGCCCAATATCTCTGCAACTTATGAGTGATCCTGTTATAATTGCTTCTGGGCAAACATATGAAAGGGTTTGCATAGAGAAATGGTTTAGAGATGGGCACAAGACCTGTCCAAAGACGCAACAGAAACTTTCACATCTTTCATTGACTCCTAATTACTGTGTTAAGGGTCTTGTGGCTAGTTGGTGTGAACAGAATGGAGTTGCTATTCCTGAAGGCCCTCCTGAATCTCTTGATTTTAACTACTGGAGATTGGCATTATCTGATACTGAATCCACTAATTCAAGATCTGCAAACAGTGTTGGCTCTTGCAAGTTGAAGGGTGTCAAAGTTGTTCCCGTAGAAGAGAGTGGTATCTCAGAGCAAATGGGGGGGAATGCAGCTGAAGATTTTTCTGCACAAGAGGAAGATCATGAACGGTATCTTAGTTTTCTTAAAGTCTTGTCAGAAGGGGACAATTGGAAGAGGAAGTGCAAAGTTGTTGAACAGTTGAGGCTGTTGCTGCGTGATGATGAGGAAGCCAGGATTTTTATGGGGGCTAATGGATTTGTTGATGCACTTATGCAATTTCTGCAATCAGCTGTGCATGAAGGAGATGTGACGGCTCTTGAAAATGGAGCCATGGCTCTGTTCAACCTGGCTGTGAATAACAACAGAAATAAGGAAATTATGTTATCAGCAGGAATCCTGTCGCTGTTGGAGGACATGATATCAAAAACTAGTTCCTATGGTTGTGTAGCCGCCCTGTATCTGAATCTTTCTTGCCTTGAAGAAGCCAAGGGCGTGATTGGCACGAGTCAGGCTGTCCAGTTCCTTATCCAGATTCTTCACACCAAGGCAGAGGTCCAGTGCAAGATAGATTCCCTCCATGCACTCTATAACCTTTCTACTTTTTCCTCCAACATTCCGCATCTCCTTTCATCTGGCATCATTGATAGCCTACAATCCCTTCTTGTAGGCCAGGGTGATTGCACTTTGACAGAAAAATGCCTAGCTGTTTTGATAAATTTGGCTGTTTCTCCAGCAGGAAGAGAGCAAATGATGATGGCTCCTGCACTCGTAAGTGCCTTGGCTTCCACGCTGGATACCGGTGAGCTCATGGAGCAGGAGCAAGCCGCCTCTTGTCTCCTAATTTTGTGTAACAGAAGTGAGCAATGTTGTGAGATGGTCTTGCAAGAAGGGGTTATCCCTGCGTTGGTGTCATTAACGGTGAATGGAACCTCGAGAGGAAGAGAAAAGGCTCAGAAACTCTTGATGGTCTTCCGAGAGCAGCGACAACGAGAGCATTCACCTGTTAAGACAAATCAATGTGAACCTGAAAGTAGTGATTTGTCTATGCCTCCTCCTGAAACGAAACCGTTATGTAAATCAATATCTAGAAGAAAGGTGGTAGGGAAAGCTATTAGCTTTCTCTGGAAAAGCAAGAGCTATTCTGTTTACCAGTGTTAA 2298 0.4208 MDIAEVEENLFAASDAKLHGEMCKCLSAIYCKILLLFPSLEAARPRSKSGIQALCSLHVALEKAKNVLRHCSESSKLYLAITADSVLLKFEKAKCALEDSLKRVEDIVPQSIGCQIDEIVNELSSTVFALDPSEKQVGDDLIALLQKGRKLNDSNDSGELECFHLAATTIGITSSRAALAERRSLKKLIERARAEDDRRKESIIAYLLHLMRKYSKLFRSEFSDDNDSQGSQPCSPTVQRSLEDGSTGGHCHVFDRQLSKLSSFNFKPSNRESGQMLVLPEELRCPISLQLMSDPVIIASGQTYERVCIEKWFRDGHKTCPKTQQKLSHLSLTPNYCVKGLVASWCEQNGVAIPEGPPESLDFNYWRLALSDTESTNSRSANSVGSCKLKGVKVVPVEESGISEQMGGNAAEDFSAQEEDHERYLSFLKVLSEGDNWKRKCKVVEQLRLLLRDDEEARIFMGANGFVDALMQFLQSAVHEGDVTALENGAMALFNLAVNNNRNKEIMLSAGILSLLEDMISKTSSYGCVAALYLNLSCLEEAKGVIGTSQAVQFLIQILHTKAEVQCKIDSLHALYNLSTFSSNIPHLLSSGIIDSLQSLLVGQGDCTLTEKCLAVLINLAVSPAGREQMMMAPALVSALASTLDTGELMEQEQAASCLLILCNRSEQCCEMVLQEGVIPALVSLTVNGTSRGREKAQKLLMVFREQRQREHSPVKTNQCEPESSDLSMPPPETKPLCKSISRRKVVGKAISFLWKSKSYSVYQC 765
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Phco2g02964 765 ProSiteProfiles U-box domain profile. 278 352 IPR003613 GO:0004842|GO:0016567
Phco2g02964 765 CDD RING-Ubox_PUB 280 332 IPR045210 -
Phco2g02964 765 SMART arm_5 454 498 IPR000225 GO:0005515
Phco2g02964 765 SMART arm_5 581 622 IPR000225 GO:0005515
Phco2g02964 765 SMART arm_5 539 580 IPR000225 GO:0005515
Phco2g02964 765 ProSiteProfiles Armadillo/plakoglobin ARM repeat profile. 465 511 IPR000225 GO:0005515
Phco2g02964 765 SMART Ubox_2 282 345 IPR003613 GO:0004842|GO:0016567
Phco2g02964 765 Coils Coil 175 195 - -
Phco2g02964 765 Gene3D - 410 715 IPR011989 -
Phco2g02964 765 Pfam Armadillo-like 484 642 IPR006911 -
Phco2g02964 765 Pfam U-box domain 280 349 IPR003613 GO:0004842|GO:0016567
Phco2g02964 765 MobiDBLite consensus disorder prediction 709 734 - -
Phco2g02964 765 MobiDBLite consensus disorder prediction 224 243 - -
Phco2g02964 765 SUPERFAMILY ARM repeat 427 706 IPR016024 -
Phco2g02964 765 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 279 353 IPR013083 -
Phco2g02964 765 FunFam RING-type E3 ubiquitin transferase 278 352 - -
Phco2g02964 765 PANTHER U BOX DOMAIN-CONTAINING 21 705 - -
Phco2g02964 765 SUPERFAMILY RING/U-box 270 354 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Phco2g02964 Phco-Chr2 58511814 58515328 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Phco2g02964 2 58511814 58515328 Phco2g02964 2 58511814 58515328 ECH
Phco2g02964 2 58511814 58515328 Phco4g02037 4 40492806 40496382 PCT