Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Vvi1g1371 ATGCCTTCAGCAACAACCGTTCTGTCAACATACAGCACCTTTGCTGCATCAGCAATGCTGGTCCGGACGGTGTTCAGTGAAATTCAGACCACAGTCACCCAGATCATACCTCCAAAAATCCGGGAGAAAATCTTGTCCAAGATTGGAAGCCTTCTTGGTAATCCCTCTTCTCAAATTACTCTCATCTTTGATGATTACGATGGGTATGCGGTCAATCAAATGTACGAGGCTTGCAAAATCTTCCTGCGTACAAAAATCCCTCCATCAGTTCAAAAGCTTAACGTTTTCCGAGCTCCAGAACGCCAGAACCTTTTAATCACCATTGGTGAAGGTGAAACGGCTATTGACATATTCGAAGGAATTCAGGTCAAATGGGAAATGGTTTGTACCAAGAAGAGGTCCATTGAAGGCGTAGATTATGAAGCAAGATCGATGGAGCTCAGTTTCCCTAAGAAAAACATGGATAGGATTCTGAGCTCTTACTTGCCATATGTGGTGGAGAGATCAAAAGCCTTCATAGAAGAAAACAAGGTGCTGAAGCTCTATTCATATGGTGGGTCATGGGAATCAACCAACCTCCACCATCCATCAACTTTTGAAACACTGGCAATGGATTCAAAGCTCAAGCAGGACTTGATAAATGACTTGGATCGATTTGTCAAGAGAAAGAAGTACTATAAAAGAGTTGGAAGGGCATGGAAGAGAGGATATTTGTTGTACGGCCCTCCAGGCACTGGAAAGTCAAGCTTGATTGCAGCCATGGCCAACTATCTGAAATTTGACATCTATGACTTAGAGCTCACTAGTCTCCGTTGCAACTCAGAGTTTAGAAGACTGTTAGTCTCAACCACGAACCAATCAATACTTGTGATTGAAGATATTGACTGCAGCAGTGAGCTGCGGAGCCAACAACCAGGAGGGCATAATCCCAATGACAGCCAGTTGCAGTTGACATTATCTGGGTTGCTTAATTTCATTGATGGGCTGTGGTCAAGCTGTGGTGATGAGAGGATAATCGTGCTCACAACTAATCACAAAGAAAGGCTAGATCCTGCATTGTTGAGACCGGGGCGCATGGACATGCACATCCACATGTCCTACTGCACTCCCTGTGGATTCAAGACACTTGCGTCCAACTACCTAGGCATAAGAGATCACAGGTTGTTTCCTGAAATTGAAAAGCTGATAGTGGAGGTAGAGGTGACCCCAGCAGCAATTGCAGAAGAGCTCATGAAAAGTGAAGAAGCTGACATTGCCCTTGGAAGACTTGTTGAGTTCCTCACAAGGGTAAAGACGGCCCAAAATGAAGCAACTGATGGAAAAGATAAAGAAGCAAACAAAAAGGGAAATGAAAGCCCAGTAGTTGATCAAAGTAAGAAGAAAGCCAAAAGAAATAACCCGACAGCAAGGAATCAAAAAAGGAAGGCGATGAGGGTCGCGCGAACGCGAACCCCCTCTACCACAAATTATGACGTAGACTCTGCCACTTGGGCAGATCTTAGGTCAGTACCCCTCCTAAGTGCAATGGAGGTTACTTTGACATGCGGCCGATGTGGGATTGGCATGTGGCATTCTGTAGTTAATCTTCACCTTATCATCCTGAACCGGCGGTTGGTTGTAGCTCCGGTAAAGTCGCAGATTTTGTTTATTATGAGGCCGTAG 1662 0.4489 MPSATTVLSTYSTFAASAMLVRTVFSEIQTTVTQIIPPKIREKILSKIGSLLGNPSSQITLIFDDYDGYAVNQMYEACKIFLRTKIPPSVQKLNVFRAPERQNLLITIGEGETAIDIFEGIQVKWEMVCTKKRSIEGVDYEARSMELSFPKKNMDRILSSYLPYVVERSKAFIEENKVLKLYSYGGSWESTNLHHPSTFETLAMDSKLKQDLINDLDRFVKRKKYYKRVGRAWKRGYLLYGPPGTGKSSLIAAMANYLKFDIYDLELTSLRCNSEFRRLLVSTTNQSILVIEDIDCSSELRSQQPGGHNPNDSQLQLTLSGLLNFIDGLWSSCGDERIIVLTTNHKERLDPALLRPGRMDMHIHMSYCTPCGFKTLASNYLGIRDHRLFPEIEKLIVEVEVTPAAIAEELMKSEEADIALGRLVEFLTRVKTAQNEATDGKDKEANKKGNESPVVDQSKKKAKRNNPTARNQKRKAMRVARTRTPSTTNYDVDSATWADLRSVPLLSAMEVTLTCGRCGIGMWHSVVNLHLIILNRRLVVAPVKSQILFIMRP* 554
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Vvi1g1371 553 CDD RecA-like_BCS1 212 365 - -
Vvi1g1371 553 ProSitePatterns AAA-protein family signature. 337 355 IPR003960 GO:0005524|GO:0016887
Vvi1g1371 553 PANTHER BCS1 AAA-TYPE ATPASE 10 435 - -
Vvi1g1371 553 Gene3D - 189 363 IPR027417 -
Vvi1g1371 553 MobiDBLite consensus disorder prediction 464 480 - -
Vvi1g1371 553 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 109 424 IPR027417 -
Vvi1g1371 553 MobiDBLite consensus disorder prediction 435 463 - -
Vvi1g1371 553 MobiDBLite consensus disorder prediction 434 486 - -
Vvi1g1371 553 Pfam ATPase family associated with various cellular activities (AAA) 238 366 IPR003959 GO:0005524|GO:0016887
Vvi1g1371 553 SMART AAA_5 233 369 IPR003593 GO:0016887
Vvi1g1371 553 Gene3D - 364 434 - -
Vvi1g1371 553 Pfam Domain associated at C-terminal with AAA 36 129 IPR025753 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Vvi1g1371 Vvi-Chr1 19893130 19896199 Dispersed/Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Vvi1g1371 226 467 Miscellaneous Gene Families AT3G02450 32.184 1.26e-12 68.6
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Vvi1g1371 - K08900 vvi:100854173 935.25