Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Sto3g2854 ATGACAGATGGTGTACTTCTACGTGAAACACTCAAAGACTCTGATTTGGACAAGTATCGGGTTGTGGTCATGGATGAAGCTCATGAAAGATCACTTAGCACAGATGTTCTTTTTGGAATATTGAAGAAAGTGGTTGCCCAACGTCGTGATTTCAAGCTAATAGTCACATCCGCAACTCTAAATGcacaaaaattttcaaatttctttGGAAGTGTCCCAATATTCCACATTCCTGGGAGAACATTTCCTGTTAATATATTATGGAGTAAAACCCCATGTGAAGATTATGTTGAAGCTGCAGTCAAGCAAGCCATGACTATACACATAACCAGTCCACCGGGTGACATCCTTATCTTCATGACTGGCCAAGATGAGATTGAGGCCGCCTGTTATGCCCTTGCGGAGAGAATAGAACAGATGATATCATCTTCAAAGAAAGAGGTTCCTAAACTCTTGATTCTTCCCATATACTCTCAACTGCCTGCAGACTTGCAAGCAAAAATATTCCAGAAAGCTGAAGATGGAGCTCGTAAATGTATTGTGGCCACTAATATTGCCGAGACATCCTTGACCGTTGACGGTATTTTCTATGTCATTGACACAGGCTATGGTAAAATGAAGGTGTATAACCCTAGGATGGGTATGGATGCTCTTCAAGTATTCCCTGTCAGCCGTGCTGCTGCAGATCAGCGTGCTGGACGAGCTGGGAGAACCGGGCCTGGTACGTGTTATCGGTTGTATACTGAGAGTGCATATTTAAATGAGATGTTACCCAGCCCTGTTCCAGAGATCCAGAGGACTAATCTTGGCAATGTAGTATTACTGCTAAAATCTCTGAAAGTAGATAATCTACTTGACTTTGATTTCATGGATCCACCACCTCAGGATAATATTCTCAACTCCATGTATCAGTTGTGGGTGTTGGGTGCACTAAATAATGTTGGGGCTTTAACTGATCTGGGATGGAAAATGGTTGAATTTCCATTAGACCCTCCCCTCGCTAAGATGCTTTTGATGGGTGAACAGCTGGGGTGTGTAGAGGAGGTTTTGACAATTGTTTCAATGCTTTCAGTACCATCTGTCTTCTTTAGACCCAAGGACCGAGTAGAGGAGAGTGATGCAGCTCGTGAAAGGTTTTTTGTGCCAGAATCTGATCATTTAACCTTATATAATGTTTATCAGCAATGGAAGCAACACGATTACAGGGGTGATTGGTGCAATGATAATTTCTTGCATGTTAAAGGTCTAAGAAAGGCAAGAGAGGTGAGATCCCAGTTGCTTGATATTCTCAAGACTCTAAAGATTCCCCTTACGTCGAGTTGGCCCGATACCGACATTGTGAGAAAAGCAATTTGTTCAGCATACTTCCACAATGCAGCGAGATTAAAGGGGGTAGGGGAGTATGTTAACTGCCGGAATGGAATGCCATGTCATTTACACCCCAGCAGTGCTCTTTTTGGTATGGGTTGTACTCCGGAGTACGTGGTTTATCATGAGTTGATCCTGACCACCAAAGAGTACATGCAGTGTGCCACAGCGGTGGAGCCCCAGTGGTTGGCAGAGCTGGGGCCAATGTTTTTCTCTGTTAAAGAGTCTGATACATCATTACTGGAGCATAAAAAGAgacaaaaagaagagaaaacggCCATGGAAGAGGAGATGGAGAATTTGAAGAAGGCGCAGGTTGAGGCTGAGAGAGaaaggaaggagaaggagaagcaaaAGAAGGCTAAGGAACAGCAGCAAGTCTCTATGCCGGGGTTACGGAAGGGTTCATCCACATTTTTGAGACCAAAGAAATTTGGTTTGTAA 1812 0.4222 MTDGVLLRETLKDSDLDKYRVVVMDEAHERSLSTDVLFGILKKVVAQRRDFKLIVTSATLNAQKFSNFFGSVPIFHIPGRTFPVNILWSKTPCEDYVEAAVKQAMTIHITSPPGDILIFMTGQDEIEAACYALAERIEQMISSSKKEVPKLLILPIYSQLPADLQAKIFQKAEDGARKCIVATNIAETSLTVDGIFYVIDTGYGKMKVYNPRMGMDALQVFPVSRAAADQRAGRAGRTGPGTCYRLYTESAYLNEMLPSPVPEIQRTNLGNVVLLLKSLKVDNLLDFDFMDPPPQDNILNSMYQLWVLGALNNVGALTDLGWKMVEFPLDPPLAKMLLMGEQLGCVEEVLTIVSMLSVPSVFFRPKDRVEESDAARERFFVPESDHLTLYNVYQQWKQHDYRGDWCNDNFLHVKGLRKAREVRSQLLDILKTLKIPLTSSWPDTDIVRKAICSAYFHNAARLKGVGEYVNCRNGMPCHLHPSSALFGMGCTPEYVVYHELILTTKEYMQCATAVEPQWLAELGPMFFSVKESDTSLLEHKKRQKEEKTAMEEEMENLKKAQVEAERERKEKEKQKKAKEQQQVSMPGLRKGSSTFLRPKKFGL 603
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Sto3g2854 603 MobiDBLite consensus disorder prediction 538 603 - -
Sto3g2854 603 SMART ha2_5 300 390 IPR007502 GO:0004386
Sto3g2854 603 Gene3D - 1 80 IPR027417 -
Sto3g2854 603 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 1 434 IPR027417 -
Sto3g2854 603 MobiDBLite consensus disorder prediction 538 579 - -
Sto3g2854 603 Gene3D - 81 258 IPR027417 -
Sto3g2854 603 ProSiteProfiles Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. 1 78 IPR014001 -
Sto3g2854 603 Coils Coil 537 584 - -
Sto3g2854 603 Pfam Oligonucleotide/oligosaccharide-binding (OB)-fold 447 524 IPR011709 -
Sto3g2854 603 Pfam Helicase conserved C-terminal domain 110 239 IPR001650 -
Sto3g2854 603 SMART helicmild6 135 239 IPR001650 -
Sto3g2854 603 Pfam Helicase associated domain (HA2) 302 388 IPR007502 GO:0004386
Sto3g2854 603 ProSiteProfiles Superfamilies 1 and 2 helicase C-terminal domain profile. 100 280 IPR001650 -
Sto3g2854 603 Gene3D - 284 440 - -
Sto3g2854 603 CDD SF2_C_RHA 82 247 - -
Sto3g2854 603 PANTHER ATP-DEPENDENT RNA HELICASE 1 529 - -
Sto3g2854 603 PANTHER PRE-MRNA-SPLICING FACTOR ATP-DEPENDENT RNA HELICASE PRP16 1 529 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Sto3g2854 Sto-Chr3 33182405 33184392 Transposed
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Sto3g2854 K12815 - gmx:100804199 1112.06
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Sto3g2854 3 33182405 33184392 Sto3g2854 3 33182405 33184392 ECH