Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele56g0221 ATGGCGAGAAGATCAGTATCCCTCTTTAAACAGCTTTACGCGACATCGCAGTCATTAATTTCCTCCCGATCTGTCACTTACATGCCCCGACCTGGGGATGGTACTCCACGCGCGGTGACCCTCATTCCTGGCGATGGAATTGGACCTCTTGTTACGGGTGCTGTTGAGCAAGTGATGGAGGCAATGCACGCGCCGGTTTACTTCGAGAAGTATGAAGTCCACGGTGACATGCCGAGAGTGCCGCAGGAGGTGATCGATTCGATAAAGAAGAACAAGGTTTGCTTGAAGGGTGGATTGGCTACACCCATGGGCGGTGGTGTAAGCTCGTTGAACGTGCGGCTCAGGAAAGAGCTTGATCTGTATGCTTCGCTCGTGAATTGCTTTAATCTTCCTGGCCTGGTGACGAGGCACGAGAATGTTGATATTGTCGTGATTAGGGAGAATACGGAGGGAGAGTATTCTGGACTAGAACATGAGGTCGTTCCCGGCGTCGTTGAAAGCCTTAAGCTTGTTTCAAAGCCTGAGCAGTTTGATGTAATGGTAACCCCAAATCTGTATGGAAATCTAGTTGCAAATACAGCAGCAGGTATTGCTGGAGGCACTGGAGTGATGCCAGGAGGAAATGTTGGGGCTGATCATGCTGTGTTTGAGCAAGGTGCTTCAGCAGGAAATGTTGGTAATGAGAAATTATTGGAACAAAAGACCGCGAACCCTGTAGCACTGCTTCTCTCATCAGCCATGATGCTCAGACATCTTCAGTTTCCTGCATTTGCCGATCGATTGGAAACTGCTGTGAAACGAGTCATTCTTGAGGGCGAACACCGGACAAAAGACCTCGGAGGGCAAAGCACCACACAAGAGGTTGTTGATGCAGTGTTGAATGCTTTAGACTGA 894 0.4933 MARRSVSLFKQLYATSQSLISSRSVTYMPRPGDGTPRAVTLIPGDGIGPLVTGAVEQVMEAMHAPVYFEKYEVHGDMPRVPQEVIDSIKKNKVCLKGGLATPMGGGVSSLNVRLRKELDLYASLVNCFNLPGLVTRHENVDIVVIRENTEGEYSGLEHEVVPGVVESLKLVSKPEQFDVMVTPNLYGNLVANTAAGIAGGTGVMPGGNVGADHAVFEQGASAGNVGNEKLLEQKTANPVALLLSSAMMLRHLQFPAFADRLETAVKRVILEGEHRTKDLGGQSTTQEVVDAVLNALD 297
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele56g0221 297 Gene3D Isopropylmalate Dehydrogenase 27 170 - -
Lele56g0221 297 Gene3D Isopropylmalate Dehydrogenase 171 297 - -
Lele56g0221 297 SUPERFAMILY Isocitrate/Isopropylmalate dehydrogenase-like 38 296 - -
Lele56g0221 297 PANTHER DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE 27 172 - -
Lele56g0221 297 SMART Iso_dh_2 38 292 IPR024084 -
Lele56g0221 297 Pfam Isocitrate/isopropylmalate dehydrogenase 39 160 IPR024084 -
Lele56g0221 297 Pfam Isocitrate/isopropylmalate dehydrogenase 168 292 IPR024084 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele56g0221 Lele-ChrLele56 1799227 1802463 Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0035 49 239300 244842 Lele56g0221 56 1799227 1802463 CCT
Lele50g0040 50 280483 284135 Lele56g0221 56 1799227 1802463 CCT
Lele51g0037 51 249089 255365 Lele56g0221 56 1799227 1802463 CCT
Lele56g0221 56 1799227 1802463 Lele49g0026 49 173992 179057 CCT
Lele56g0221 56 1799227 1802463 Lele50g0031 50 223869 230049 CCT
Lele56g0221 56 1799227 1802463 Lele51g0028 51 193091 198769 CCT
Lele56g0221 56 1799227 1802463 Lele52g0033 52 218644 224728 CCT
Lele56g0221 56 1799227 1802463 Lele56g0221 56 1799227 1802463 ECH
Lele53g1253 53 21120753 21123992 Lele56g0221 56 1799227 1802463 hybridization
Lele54g1226 54 17747283 17750538 Lele56g0221 56 1799227 1802463 hybridization