Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele54g1226 ATGGCGAGAAGATCAGTATCCCTCTTTAAACAGCTTTTCACGACATCGCAATCATTCATTTCCTCCCGATCTGTCACTTACATGCCTCGACCTGGGGATGGTGCTCCACGCGCGGTGACCCTCATTCCTGGCGATGGAATTGGACCTCTTGTTACGGGTGCTGTTGAGCAAGTGATGGAGACAATGCACGCGCCGGTTTACTTCGAGAAGTATGAAGTCCACGGTGACATGCCAAGAGTGCCGCAGGAGGTGATCGATTCGATAAAGAAGAACAAGGTTTGCTTGAAGGGTGGATTGGCTACACCCATGGGCGGTGGTGTAAGCTCGTTGAACGTGCAGCTCAGGAGAGAGCTTGATCTGTATGCTTCGCTCGTGAATTGCTTTAATCTTCCTGGCCTGGTGACGAGGCACGAGAATGTTGATATTGTCGTGATTAGGGAGAATACGGAGGGAGAGTATGCTGGACTAGAACATGAGGTTGTTCCCGGAGTCGTTGAAAGCCTTAAGGTAATCACAAAGTTCTGCTCAGAGCGTATTGCTAAATATGCTTTTGAGTATGCTTATCTGAACAACAGAAAGAAAGTAACTGCTGTGCACAAAGCAAATATTATGAAGCTAGCAGATGGTTTATTCTTGGAATCTTGTCGAGAGGTTGCCACAAAGTATCCTGGAATCAAGTATAATGAAATTATTGTGGATAACTGCTGCATGCAGCTTGTTTCAAAGCCTGAGCAGTTTGATGTCATGGTAACCCCAAATCTTTATGGAAATCTAGTTGCAAATACAGCAGCAGGTATTGCTGGAAGCACTGGAGTGATGCCAGGAGGAAATGTTGGGGCTGATCATGCTGTGTTTGAGCAAGGTGCTTCAGCAGGAAATGTTGGTAATGATAAATTATTGGAACAAAAGACAGCGAACCCAGTAGCACTGCTTCTCTCGTCAGCCATGATGCTCAGACATCTTCAGTTTCCTGCATTTGCCGACCGATTGGAAACTGCTGTGAAACGAGTCATTCTTGAGGGCGAACACCGGACAAAAGACCTCGGAGGGCAAAGCACCACCCAAGAGGTTGTTGATGCAGTGTTGAATGCTTTAGACTGA 1101 0.4668 MARRSVSLFKQLFTTSQSFISSRSVTYMPRPGDGAPRAVTLIPGDGIGPLVTGAVEQVMETMHAPVYFEKYEVHGDMPRVPQEVIDSIKKNKVCLKGGLATPMGGGVSSLNVQLRRELDLYASLVNCFNLPGLVTRHENVDIVVIRENTEGEYAGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNNRKKVTAVHKANIMKLADGLFLESCREVATKYPGIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVANTAAGIAGSTGVMPGGNVGADHAVFEQGASAGNVGNDKLLEQKTANPVALLLSSAMMLRHLQFPAFADRLETAVKRVILEGEHRTKDLGGQSTTQEVVDAVLNALD 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele54g1226 366 Pfam Isocitrate/isopropylmalate dehydrogenase 39 361 IPR024084 -
Lele54g1226 366 Gene3D Isopropylmalate Dehydrogenase 26 366 - -
Lele54g1226 366 FunFam Isocitrate dehydrogenase [NAD] regulatory subunit 1 26 365 - -
Lele54g1226 366 SUPERFAMILY Isocitrate/Isopropylmalate dehydrogenase-like 38 365 - -
Lele54g1226 366 TIGRFAM mito_nad_idh: isocitrate dehydrogenase, NAD-dependent 35 364 IPR004434 GO:0006099
Lele54g1226 366 PANTHER DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE 23 365 - -
Lele54g1226 366 SMART Iso_dh_2 38 361 IPR024084 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele54g1226 Lele-ChrLele54 17747283 17750538 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0035 49 239300 244842 Lele54g1226 54 17747283 17750538 CCT
Lele50g0040 50 280483 284135 Lele54g1226 54 17747283 17750538 CCT
Lele51g0037 51 249089 255365 Lele54g1226 54 17747283 17750538 CCT
Lele54g1226 54 17747283 17750538 Lele49g0026 49 173992 179057 CCT
Lele54g1226 54 17747283 17750538 Lele50g0031 50 223869 230049 CCT
Lele54g1226 54 17747283 17750538 Lele51g0028 51 193091 198769 CCT
Lele54g1226 54 17747283 17750538 Lele52g0033 52 218644 224728 CCT
Lele54g1226 54 17747283 17750538 Lele54g1226 54 17747283 17750538 ECH
Lele54g1226 54 17747283 17750538 Lele55g0233 55 1436130 1439417 hybridization
Lele54g1226 54 17747283 17750538 Lele56g0221 56 1799227 1802463 hybridization