Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele50g0040 ATGAACAAAGCCCCGTCCGCGTGCTCTGCCAATTACGTGCCTTTGACTCCTATCATTTTCTTGGAACGGGCCGCCACCGTGCACGCCGATAAGCCGTCCATCGTCTACGGTGATGTCAGATTTTCATGGAAGGAAACCCACGGAAGATGCCTCAGGCTCGCTTCTGCTTTGCTCAACCTGGGTATTTCTCACCCTGATATTGTTGCGGCTTTGGCACCAAATATTCCAGAGCTCTATGAGCTGCATTTCGCTATTCCAATGGCCGGGGCAGTTATTTCTGCACTCAACACCAAACTGGACGCCACCACATTGTCTGTGATATTGGAACAGCTAGAAGCTAAAATTATGTTTGTGGACTATCAGTTCGTTGAAGTTGTCCTTAAATCGTTCAATATACTGTCTCAAACAAAATGCAAGCCTCCGCTTCTTGTTGTTATCCCAGATTATAACAACCACCCACCTCTCATTCTTAAGAATCTGCCGCCAGACACCCTGCACTTCAACCAACTGCTTGAGAAGGGACCAGCATCTTTTGAGATTAGAATGCCGACCAATGAATGCAATCCTATATCAGTGAATTATACGTCAGGCTCCACGGGAACTCCTAAAGGAGCCATTTACAGTCACAGAGGAGCCTATCTTAATTCATTGGCCGCAATCTCGCGGTTCGATGTGAAACCAATGCCCGTGTTTCTGTGGACAGTGGACATGTTTCGTTGCAACGGGTGGTGCTTTACTTGGGCAATGGCTACTGTGGGTGGCACCAATATTTGTCTTAGAAATGTCTCAGCCAAAGCCATGTTCGATGCAATCTCTCTTCACAACGTGACCCATCTGTGCGGTCCACCCGCACTTTTGAACGTAATCGCAGAAGCACCACAAAGTGAACAGAGGCCTCTGCCTCTGGGTGTGAGCATCACAGTTGCTGGAGTGCTTCCACCGTCCCAAGTTTTCTGCAAGGTGGCAGAACTTGGGTTCAGTGTGAACGTTGGATATGGCATGACAGAAGCAATGGGTCCTGTGCTGGTGCGACCTTGGAAACCCAATTCAGGTGATGAAGAACTCACTGAAAAAATCAGTTATGGAGATGAAGGGTTTCCCATATTAATGATGGAAGGGATTGATGTTAAAGATCCAAACACGATGGAGGGTATTCCTTGTGATGGGAAAACCATTGGTGAGGTTATGTTTAAAGGCAACACCATGATGCTAGGGTACCTTAAGAATCGACAATTAACCATGGAAGCTTTCAGAGAGGGATGGTACAGAACAGGGGATCTTGCAACGAAGCAAAAGGATGGTTCCATAAGACTAAAGGACAGAGCAAAAGATATGATATATTCAAAAGGGGAGGCTGTGAGCTCACTCGAGGTGGAGGCTGTGTTACTGAGCCACCCCAAGGTTCTGAATGCTGCCGTTGTGGGGAGATATGATGAACATATGGTAGAGTCGCCCTTTGCAATTATCAAATTGAAAGAAGGATGTGGGGCCACGGTGGAAGATATTATCAGGTTTTGTAAAGCTAGGTTGGATACTCACATGGTTCCTCAGAGTGTGGTTTTCGGAGATTTGCCTGTTAATTCAACCGGCAAGGTTCAAAAATTTCTTATCAGAGAGAAGATCAAATGCGGTGGATGA 1638 0.4658 MNKAPSACSANYVPLTPIIFLERAATVHADKPSIVYGDVRFSWKETHGRCLRLASALLNLGISHPDIVAALAPNIPELYELHFAIPMAGAVISALNTKLDATTLSVILEQLEAKIMFVDYQFVEVVLKSFNILSQTKCKPPLLVVIPDYNNHPPLILKNLPPDTLHFNQLLEKGPASFEIRMPTNECNPISVNYTSGSTGTPKGAIYSHRGAYLNSLAAISRFDVKPMPVFLWTVDMFRCNGWCFTWAMATVGGTNICLRNVSAKAMFDAISLHNVTHLCGPPALLNVIAEAPQSEQRPLPLGVSITVAGVLPPSQVFCKVAELGFSVNVGYGMTEAMGPVLVRPWKPNSGDEELTEKISYGDEGFPILMMEGIDVKDPNTMEGIPCDGKTIGEVMFKGNTMMLGYLKNRQLTMEAFREGWYRTGDLATKQKDGSIRLKDRAKDMIYSKGEAVSSLEVEAVLLSHPKVLNAAVVGRYDEHMVESPFAIIKLKEGCGATVEDIIRFCKARLDTHMVPQSVVFGDLPVNSTGKVQKFLIREKIKCGG 545
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele50g0040 545 Pfam AMP-binding enzyme C-terminal domain 457 531 IPR025110 -
Lele50g0040 545 Pfam AMP-binding enzyme 21 447 IPR000873 -
Lele50g0040 545 ProSitePatterns Putative AMP-binding domain signature. 192 203 IPR020845 -
Lele50g0040 545 CDD ttLC_FACS_AEE21_like 12 539 - -
Lele50g0040 545 SUPERFAMILY Acetyl-CoA synthetase-like 14 541 - -
Lele50g0040 545 Gene3D - 4 442 IPR042099 -
Lele50g0040 545 Gene3D - 443 543 IPR045851 -
Lele50g0040 545 PANTHER ACYL-ACTIVATING ENZYME 2 542 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele50g0040 Lele-ChrLele50 280483 284135 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele50g0040 78 542 Miscellaneous Gene Families AT1G20560 48.832 4.34e-159 460
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele50g0040 50 280483 284135 Lele53g1253 53 21120753 21123992 CCT
Lele50g0040 50 280483 284135 Lele54g1226 54 17747283 17750538 CCT
Lele50g0040 50 280483 284135 Lele55g0233 55 1436130 1439417 CCT
Lele50g0040 50 280483 284135 Lele56g0221 56 1799227 1802463 CCT
Lele56g0218 56 1776795 1777670 Lele50g0040 50 280483 284135 CCT
Lele50g0040 50 280483 284135 Lele51g0037 51 249089 255365 hybridization
Lele50g0040 50 280483 284135 Lele52g0041 52 273520 277152 hybridization