Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele53g1253 ATGGCGAGAAGATCAGCTTCACTTCTTAAACAGCTCTTCACAACATTAGAATCATCGGACACTCCCAACATCGTCTCCTCATGCTCCCGATTTCTTCCCTCCCGATCTGTCACTTACATGCCCCGACCTGGGGATGGTGCTCCACGCGCGGTGACCCTCATTCCCGGCGATGGAATTGGACCTCTTGTTACGGGTGCTGTTGAGCAAGTGATGGAGGCGATGCACGCACCGGTTTACTTCGAGAAGTATGAAGTCCACGGTGACATGCCGAGAGTGCCGCAGGAGGTGATCGATTCGATAAAGAAGAACAAGGTTTGCTTGAAGGGCGGGTTGGCTACACCCATGGGCGGTGGTGTAAGCTCGTTGAACGTGCAGCTCAGGAAAGAGCTTGATCTGTATGCTTCACTTGTGAATTGCTTTAATCTTCCCGGCCTGGTGACGAGGCACGAGAATGTTGACATTGTCGTGATTAGGGAGAATACGGAGGGAGAGTATTCTGGCCTGGAACATGAAGTCGTTCCGGGAGTCGTTGAAAGCCTTAAGGTAATCACAAAGTTCTGCTCAGAGCGTATTGCTAAATATGCTTTTGAGTATGCTTATCTAAACAACAGAAAGAAAGTGACTGCTGTGCACAAAGCAAATATTATGAAGCTAGCAGATGGTTTATTCTTGGAATCTTGTCGAGAGGTTGCCACAAAGTATCCTGGAATCAAGTATAATGAAATTATTGTGGATAACTGCTGCATGCAGCTTGTTTCAAAGCCTGAGCAGTTTGATGTCATGGTAACCCCGAATCTTTATGGAAATCTAGTTGCAAATACAGCAGCAGGTATTGCTGGAGGCACTGGAGTAATGCCAGGAGGAAATGTTGGGGCTGATCATGCCGTGTTTGAGCAAGGTGCTTCAGCAGGAAATGTTGGTAATGATAAATTATTGGAACAAAAGACAGCAAATCCAGTAGCACTGCTTCTCTCATCAGCCATGATGCTCAGACATCTTCAGTTTCCTGCATTTGCTGACCGATTGGAAACCGCGGTGAAACGAGTCATTCTTGAGGGCAAACACCGGACAAAAGACCTCGGAGGGCAAAGCACCACCCAAGAGGTCGTTGATGCAGTGTTGAATGCTTTAGACTGA 1137 0.4749 MARRSASLLKQLFTTLESSDTPNIVSSCSRFLPSRSVTYMPRPGDGAPRAVTLIPGDGIGPLVTGAVEQVMEAMHAPVYFEKYEVHGDMPRVPQEVIDSIKKNKVCLKGGLATPMGGGVSSLNVQLRKELDLYASLVNCFNLPGLVTRHENVDIVVIRENTEGEYSGLEHEVVPGVVESLKVITKFCSERIAKYAFEYAYLNNRKKVTAVHKANIMKLADGLFLESCREVATKYPGIKYNEIIVDNCCMQLVSKPEQFDVMVTPNLYGNLVANTAAGIAGGTGVMPGGNVGADHAVFEQGASAGNVGNDKLLEQKTANPVALLLSSAMMLRHLQFPAFADRLETAVKRVILEGKHRTKDLGGQSTTQEVVDAVLNALD 378
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele53g1253 378 SMART Iso_dh_2 50 373 IPR024084 -
Lele53g1253 378 FunFam Isocitrate dehydrogenase [NAD] regulatory subunit 1 38 377 - -
Lele53g1253 378 PANTHER DECARBOXYLATING DEHYDROGENASES-ISOCITRATE, ISOPROPYLMALATE, TARTRATE 37 377 - -
Lele53g1253 378 Pfam Isocitrate/isopropylmalate dehydrogenase 51 373 IPR024084 -
Lele53g1253 378 Gene3D Isopropylmalate Dehydrogenase 38 378 - -
Lele53g1253 378 SUPERFAMILY Isocitrate/Isopropylmalate dehydrogenase-like 50 377 - -
Lele53g1253 378 TIGRFAM mito_nad_idh: isocitrate dehydrogenase, NAD-dependent 47 376 IPR004434 GO:0006099
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele53g1253 Lele-ChrLele53 21120753 21123992 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele49g0035 49 239300 244842 Lele53g1253 53 21120753 21123992 CCT
Lele50g0040 50 280483 284135 Lele53g1253 53 21120753 21123992 CCT
Lele51g0037 51 249089 255365 Lele53g1253 53 21120753 21123992 CCT
Lele53g1253 53 21120753 21123992 Lele49g0026 49 173992 179057 CCT
Lele53g1253 53 21120753 21123992 Lele50g0031 50 223869 230049 CCT
Lele53g1253 53 21120753 21123992 Lele51g0028 51 193091 198769 CCT
Lele53g1253 53 21120753 21123992 Lele52g0033 52 218644 224728 CCT
Lele53g1253 53 21120753 21123992 Lele53g1253 53 21120753 21123992 ECH
Lele53g1253 53 21120753 21123992 Lele55g0233 55 1436130 1439417 hybridization
Lele53g1253 53 21120753 21123992 Lele56g0221 56 1799227 1802463 hybridization