Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele28g0631 ATGTCTCTAAGACCGTCCGCTTCGTTGGAGAATCTGACACTGCCGGTATCAGATACTCCAAAGGACCAAGATGGAAAGGCACTTTTCATGGCTGATGAGAAGCTCTTTAAAGGTTCTGCTATGACCAAACGTGGAGCCTACGCTGCTCTTTCCTACATGTCATGCGCAGTGCTTTTGGTGATGTTCAATAAGGCAGCTCTTTCATCTTACAACTTCCCATCTGCAAATGTCATCACATTTCTTCAGATGGTATGTTCTTGTTCTTTTTTGTATATATTGAGGAGGAGGAAGATAATCTCTTTCACAGCAGGTGATTCTTTGATTTCATATGACAACTCAACAAAATTTGTACCATTGAAGACTTTGAAGCACACCCTTCCTCTATCGGGAACATATTTGTTTTACATGCTAGTCACCATGGAATCTGTTCGTGGAGTAAATGTTCCAATGTACGCCACCCTTAGGAGGACAACAGTAGTATTCACAATGATTGTTGAGTATATTCTGGTTGGGCAGAGATATACATCGTCTGTCATTTTCAGTGTTGGCTTGATTGCCTTTGGTGCTTTTGTTGCGGGAGTGCGAGACTTGTCATTTGATGCTTACGGTTATTCGATTGTTTTCATGGCGAACATCAGCACAGCAATATATCTTGCCACCATTGCCCGTGTTGGAAAAACTAGTGGGCTTAATAGCTTTGGCCTCATGTGGTGCAACAGTATCGTATGTGGACCAGTTTTGCTAATTTGGACACTAGTTCAGGGCGACTTGAAGATGGCAATCAATTTTCCTTATATTTTTTCTCCAGGTTTTGTGGTTGTTTTGCTTTGTTCCTGCATACTGGCTTTCTTCTTGAATTACAGTATTTTTCTGAACACAACTCTAAATTCAGCTCTTACTCAGACAATCTGTGGTAGTCTGAAGGATCTATTCACTATTGGCCTGGGCTGGATATTATTTGGAGGACTACCGTTTGATTTTTGGAATGTAGTTGGGCAACTTCTCGGCTTCATTGGTTCTCTTTTATATGCCTACTATAAGCTGTCGGTTCCTGACGCTATTGAGCGAAGGTTTGTCTTATTCAGAGCTATGGACGATTGTAAATTGGTAGAGCGTGATTTTGCTTCAAGAGTTTCAAAGGAGAGCCCTCGTAGTCGCCGATCTCTGGCTTTGCCATTCTCTCCATTCACGATCATGGATGGCATTTTCTCCCGGAAGAGCTTTTCGTATCGTAAACTTCCTTCCGAGCCTCTCAGGCTCTCCGTTCTCAAATTGGACGGCTCTTGCTTTGATATTGTGGTTACAAAGACGGCCACTATCGCAGAACTTAGGCAAGCAGTGGAGGCAGTTTTCAGTCACATGCCTAAGGAGGGACCAGGGAAAATTTCATGGCCGCATGTTTGGGGGCAATTTTGCTTATGCTATGATGGACAGAAGCTAGTTACAGAAACAGATTATCTTAAAAACTATGGCATCAAGGATGGTGACCAGCTTCGTTTCATCCGACATGTCTCAAATAGTTGCAATGTGAGAAGGAGGAGATTCAAGAAACGTATTGTTAGTTCAAAACAAAAAAGGGGGTCTTCATCAAAAGTAAGTAGCTATCAGCAGAAAGATCACGATGGCAGTGACAGTGATGATGAAATTGGTTTGGATAGCATAGTGATAGAGAAGGGGAATATTCAGCATTTCAATAGTGATGATCGCGTTAAGAATCTTGAAAACAAGCTAACAAGCTTCTGGGGAGGGTTATTAACATGCACACGACTTGCAGTCATGAGAAGAAATAGAAGCGCAGGCAGGATTTGTCCCCTGAGGCTTGCTCGAGGCTTACTGGGCAGTTTTAGGAAGATAAGCTTTTACAGGAAAAAGCGATTTTATTGA 1884 0.4236 MSLRPSASLENLTLPVSDTPKDQDGKALFMADEKLFKGSAMTKRGAYAALSYMSCAVLLVMFNKAALSSYNFPSANVITFLQMVCSCSFLYILRRRKIISFTAGDSLISYDNSTKFVPLKTLKHTLPLSGTYLFYMLVTMESVRGVNVPMYATLRRTTVVFTMIVEYILVGQRYTSSVIFSVGLIAFGAFVAGVRDLSFDAYGYSIVFMANISTAIYLATIARVGKTSGLNSFGLMWCNSIVCGPVLLIWTLVQGDLKMAINFPYIFSPGFVVVLLCSCILAFFLNYSIFLNTTLNSALTQTICGSLKDLFTIGLGWILFGGLPFDFWNVVGQLLGFIGSLLYAYYKLSVPDAIERRFVLFRAMDDCKLVERDFASRVSKESPRSRRSLALPFSPFTIMDGIFSRKSFSYRKLPSEPLRLSVLKLDGSCFDIVVTKTATIAELRQAVEAVFSHMPKEGPGKISWPHVWGQFCLCYDGQKLVTETDYLKNYGIKDGDQLRFIRHVSNSCNVRRRRFKKRIVSSKQKRGSSSKVSSYQQKDHDGSDSDDEIGLDSIVIEKGNIQHFNSDDRVKNLENKLTSFWGGLLTCTRLAVMRRNRSAGRICPLRLARGLLGSFRKISFYRKKRFY 627
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele28g0631 627 PANTHER U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 25 KDA PROTEIN 378 623 IPR039690 GO:0000398|GO:0005689
Lele28g0631 627 SUPERFAMILY Ubiquitin-like 414 507 IPR029071 -
Lele28g0631 627 Gene3D - 413 510 - -
Lele28g0631 627 MobiDBLite consensus disorder prediction 518 547 - -
Lele28g0631 627 CDD Ubl_SNRNP25 418 503 IPR040610 -
Lele28g0631 627 Pfam Ubiquitin-like domain 418 504 IPR040610 -
Lele28g0631 627 Pfam Triose-phosphate Transporter family 55 343 IPR004853 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele28g0631 Lele-ChrLele28 4021626 4028849 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Lele28g0631 23 288 Organic Solute Cotransporters AT2G13650 24.000 5.08e-10 59.3
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele28g0631 28 4021626 4028849 Lele01g0644 01 3767296 3771825 CCT
Lele28g0631 28 4021626 4028849 Lele02g0630 02 3768407 3773641 CCT
Lele28g0631 28 4021626 4028849 Lele03g0643 03 3774133 3778156 CCT
Lele28g0631 28 4021626 4028849 Lele04g0650 04 3909259 3913578 CCT
Lele01g0656 01 3836906 3840120 Lele28g0631 28 4021626 4028849 CCT
Lele02g0644 02 3847885 3852930 Lele28g0631 28 4021626 4028849 CCT
Lele03g0656 03 3842611 3843233 Lele28g0631 28 4021626 4028849 CCT
Lele04g0662 04 3996952 4001477 Lele28g0631 28 4021626 4028849 CCT
Lele25g0634 25 3999303 4008222 Lele28g0631 28 4021626 4028849 hybridization
Lele26g0648 26 4117136 4120503 Lele28g0631 28 4021626 4028849 hybridization