Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Lele25g0634 ATGTCTCTAAGACAGTCCGCTTCGTCGGAGAATCTGACACTGCCGGTATCGGATACGCCAAAGGACCAAGATGGAAAGGCGCTTTTAATGGTTGATGAGAAGCTCTTTAAAGGTTCTGCTATGACCAAACGTGGAGCCTACGCTGCTCTCTCCTATATGTCATGCGCAGTGCTCTTGGTGATGTTCAATAAGGCAGCTCTTTCATCTTACAACTTCCCATCTGCAAATGTCATCACATTTCTTCAGCTAGTTACCATGGAGTCCGTTCGTGGACTAAATGTTCCCATGTACACCACTCTTCGGAGGACAACAGTAGTATTTACAATGAGTGTTGAGTATATTCTGGTTGGGCAGAGATATACATCGTCTGTTGTTATCAGTGTTGGCTTGATTGCCTTTGGTGCTTTTGTTGCGGGAGTGCGAGACTTGTCATTTGATGCTTATGGTTATTCCATTGTTTTCATGGCAAACATCAGCACAGCCATATATCTTGCTACCATTGCCCGTGTTGGAAAAACCAGTGGGCTTAATAGCTTTGGCCTCATGTGGTGCAACAGTATCTCATGTGGACCAATTTTACTGATTTGGACATTAGTTCAGGGAGACTTGAAGATGGCAGTCAATTTTCCTTATATTTTTTCACCAGGTTTTGTGGTTGTTTTGCTTTGTTCCTGCATACTGGCTTTCTTCTTGAATTACAGTATTTTTCTGAACACAACTCTAAATTCAGCTCTTACTCAGACAATCTGTGGTAGTCTGAAGGATCTATTCACTATTGGCCTGGGCTGGATTTTATTTGGAGGGCTACCGTTTGATTTTTGGAATGTAGTTGGGCAACTTCTCGGCTTCATTGGTTCTCTTCTATATGCCTACTATGAGCTAAGATCAAAAGGTGAACATGAAGCTGTGCCATGAGCTATGGATGACTGTAAATCGGTACAGCGTGATGTTGCTTTCAGAGTTTCAAAAGAGAGCCCTCGAAGTCGCCGATCCCTGGCTTTGCCATTCTCTCCATTCACGATCATGGATGGCATTTTCTCCCGGAAGAGTTTTTCGTATCTCAAACTTCCTTCCGAGCCTCTTAAGCTCTCCGTCCTCAAATTGGACGGCTCTTGTTTCGATATTGTGGTTACAAAGACGGGCACTATCGCAGAACTTAGGCAGGCTGTGGAGGCAGTTTTCAGTCACATGCCTGAGAAGGGACCGGGGAAAATTTCATGGCCGCATGTTTGGGGGCAATTTTGCTTATGCTATGATGGACAGAAGCTAGTTACAGAAACAGATTATCTTAAAAACTATGGCATCAAGGATGGTGACCAGCTTCGTTTCATCCGACATGTCTCAAATAGTTGCAATGTGAGAAGGAGGAGATTCAAGAAACGTATTTGTGGTCATTGCTTTTATTGGTCTGGGAAACAATTGCATCCTCAAAAAAATGTCAACAAGAACCAATATGATTTTAGTGACCAATCTTTCATTAGTGCCTGTATAATTATAGTAAGGTCTTCATCAAAAGTAAGCAGCTATCAGCAGAAAGATAACGATGGCAGTGACAGTGATGATGAAATTGGTTTGGATAGCATAGTGATAGAGAAAGGGAATATTCAGCATTTCAATAATGATGATGGCGTTAAGAATCTTGAAAACAAGCTAACAAGCTTCTTGAGAGGGTTATTAACATGCACACGACTTGCAGTCATGAGAAGAAATAGAACCGAAGGCAGGATTTGTCCCCCGAGGCTTGCTGGAGGCTTACTGGGCAGTTTTAGGAAGATAAGCTTTTACAGGAGAAAGCGATTTTATCTAAAACATGCGGGGGAGGCTGAGGCTGAGGCTGAGGCTGAGACTGAAGAGATTGAAATCCATTCATCTGCTGCCATGGCGGCGAACATGATCATGGCCTCCTCCAAGCCTTTGATTCCCGTTTCCTCCATTTCGCCTTCCCCAAAAGTGCCAGTGCTCCAAATCTCACTCCCCAGAACCACTCTCCTCAAAATCTCCAAGCCCCAACTCTTATCCCCCGTTTCCTCCACCCTCAAATCACTTTCCCTCCTCGCTGCCTCCTCTCTTGCCTTCGCTCCTCCGTCCCTCGCCGCAGAAATCGAGAAGGCCGCTCTGTTCGACTTCAATTTGACCCTCCCCATTATCATGGCCGAGTTCCTTCTCCTCATGGTGGCCCTCGATAAGCTCTTTTTCACCCCTCTCGGCTCCTTCATGGACCAAAGGGACGCCGCCATCCGTGAGAAGCTGAGCAGCGTCAAGGACACCTCCGCGGAGGTGAAGCAGCTCGAAGAAGAGGCCGCCGCCGTCATGAAGGCTGCCAGGGCTGAGATTTCTGCCGCTCTCAATCAGATGAAGAAGGAGACTCAGGCCGAGGTGGAGCAGAAGCTCGCTGAAGGAAGGAAGAAAGTGGAGGCTGAGTTGCAGGAGGCTTTGGCCAACTTGGAGAAGCAAAAGGAAGACACCATCAAGTCCCTTGATTCCCAAATCCAAAATCTTAGCCAGGAGATTGTTAAGAAGGTTCTTCCTACTGTTTAG 2538 0.4594 MSLRQSASSENLTLPVSDTPKDQDGKALLMVDEKLFKGSAMTKRGAYAALSYMSCAVLLVMFNKAALSSYNFPSANVITFLQLVTMESVRGLNVPMYTTLRRTTVVFTMSVEYILVGQRYTSSVVISVGLIAFGAFVAGVRDLSFDAYGYSIVFMANISTAIYLATIARVGKTSGLNSFGLMWCNSISCGPILLIWTLVQGDLKMAVNFPYIFSPGFVVVLLCSCILAFFLNYSIFLNTTLNSALTQTICGSLKDLFTIGLGWILFGGLPFDFWNVVGQLLGFIGSLLYAYYELRSKGEHEAVPXAMDDCKSVQRDVAFRVSKESPRSRRSLALPFSPFTIMDGIFSRKSFSYLKLPSEPLKLSVLKLDGSCFDIVVTKTGTIAELRQAVEAVFSHMPEKGPGKISWPHVWGQFCLCYDGQKLVTETDYLKNYGIKDGDQLRFIRHVSNSCNVRRRRFKKRICGHCFYWSGKQLHPQKNVNKNQYDFSDQSFISACIIIVRSSSKVSSYQQKDNDGSDSDDEIGLDSIVIEKGNIQHFNNDDGVKNLENKLTSFLRGLLTCTRLAVMRRNRTEGRICPPRLAGGLLGSFRKISFYRRKRFYLKHAGEAEAEAEAETEEIEIHSSAAMAANMIMASSKPLIPVSSISPSPKVPVLQISLPRTTLLKISKPQLLSPVSSTLKSLSLLAASSLAFAPPSLAAEIEKAALFDFNLTLPIIMAEFLLLMVALDKLFFTPLGSFMDQRDAAIREKLSSVKDTSAEVKQLEEEAAAVMKAARAEISAALNQMKKETQAEVEQKLAEGRKKVEAELQEALANLEKQKEDTIKSLDSQIQNLSQEIVKKVLPTV 845
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Lele25g0634 845 Pfam ATP synthase B/B' CF(0) 713 842 IPR002146 GO:0015078|GO:0015986|GO:0045263
Lele25g0634 845 CDD Ubl_SNRNP25 361 446 IPR040610 -
Lele25g0634 845 Hamap ATP synthase subunit b [atpF]. 707 844 IPR002146 GO:0015078|GO:0015986|GO:0045263
Lele25g0634 845 PANTHER U11/U12 SMALL NUCLEAR RIBONUCLEOPROTEIN 25 KDA PROTEIN 698 787 IPR039690 GO:0000398|GO:0005689
Lele25g0634 845 Gene3D - 357 453 - -
Lele25g0634 845 Coils Coil 746 836 - -
Lele25g0634 845 Hamap ATP synthase subunit b' [atpF2]. 706 843 IPR034679 GO:0015078|GO:0015986|GO:0045263
Lele25g0634 845 Pfam UAA transporter family 68 291 IPR013657 GO:0055085
Lele25g0634 845 Pfam Ubiquitin-like domain 361 447 IPR040610 -
Lele25g0634 845 CDD ATP-synt_Fo_b 712 842 - -
Lele25g0634 845 SUPERFAMILY Ubiquitin-like 357 450 IPR029071 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Lele25g0634 Lele-ChrLele25 3999303 4008222 Dispersed/Wgd
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Lele01g0656 01 3836906 3840120 Lele25g0634 25 3999303 4008222 CCT
Lele02g0644 02 3847885 3852930 Lele25g0634 25 3999303 4008222 CCT
Lele03g0656 03 3842611 3843233 Lele25g0634 25 3999303 4008222 CCT
Lele04g0662 04 3996952 4001477 Lele25g0634 25 3999303 4008222 CCT
Lele25g0634 25 3999303 4008222 Lele27g1452 27 20680162 20682620 hybridization
Lele25g0634 25 3999303 4008222 Lele28g0631 28 4021626 4028849 hybridization